Gene annotation
Transcriptome id Sobic.006G088200.1,Sobic.006G088200.2
Synonym UPF3, ATUPF3, Sb06g017380
Functional annotation nonsense-mediated decay UPF3, putative, expressed
UniProt A0A1B6PL15
Pfam PF04059
Panther DB PTHR13112 PTHR13112:SF0
NCBI CDD -
KEGG Orthology K14328; UPF3, regulator of nonsense transcripts 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G33980 : Smg-4/UPF3 family protein
RAP-DB (Rice) LOC_Os04g35920.2 : nonsense-mediated decay UPF3, putative, expressed
MaizeGDB (Corn) Zm00025a056109 , Zm00025a011287
Brachypodium KQJ82753 , KQJ82754 , KQJ82755
Barley -
Wheat TraesCS2B02G325600 , TraesCS2A02G308800 , TraesCS2A02G308800 , TraesCS2A02G308800 , TraesCS2A02G308800 , TraesCS2A02G308800 , TraesCS2D02G307000 , TraesCS2D02G307000 , TraesCS2D02G307000 , TraesCS2A02G308800 , TraesCS2D02G307000 , TraesCS2D02G307000 , TraesCS2D02G307000 , TraesCS2D02G307000 , TraesCS2A02G308800 , TraesCS2D02G307000 , TraesCS2B02G325600 , TraesCS2B02G325600 , TraesCS2B02G325600 , TraesCS2B02G325600 , TraesCS2B02G325600 , TraesCS2B02G325600 , TraesCS2B02G325600 , TraesCS2B02G325600 , TraesCS2B02G325600 , TraesCS2A02G308800 , TraesCS2A02G308800 , TraesCS2A02G308800 , TraesCS2D02G307000 , TraesCS2D02G307000
Populus -


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cDNA sequences
Sobic.006G088200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
2 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
3 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
4 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
5 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
6 Sobic.003G379200 wound-responsive family protein, putative, expressed -
7 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
8 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
9 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
10 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
11 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
12 Sobic.002G179400 DNA binding protein, putative, expressed -
13 Sobic.002G154000 EDM2, putative, expressed -
14 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
15 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
16 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
17 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
18 Sobic.003G166750 - K15188: cyclin T
19 Sobic.002G429300 importin subunit beta, putative, expressed -
20 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7


Gene co-expression network
sample Sobic006G088200 Sobic006G088200 Sobic003G095900 Sobic003G095900 Sobic006G088200--Sobic003G095900 Sobic003G360400 Sobic003G360400 Sobic006G088200--Sobic003G360400 Sobic001G493700 Sobic001G493700 Sobic006G088200--Sobic001G493700 Sobic001G275300 Sobic001G275300 Sobic006G088200--Sobic001G275300 Sobic002G133300 Sobic002G133300 Sobic006G088200--Sobic002G133300 Sobic003G379200 Sobic003G379200 Sobic006G088200--Sobic003G379200 Sobic003G214600 Sobic003G214600 Sobic006G088200--Sobic003G214600 Sobic001G433800 Sobic001G433800 Sobic006G088200--Sobic001G433800 Sobic001G227400 Sobic001G227400 Sobic006G088200--Sobic001G227400 Sobic004G242400 Sobic004G242400 Sobic003G095900--Sobic004G242400 Sobic003G095900--Sobic001G433800 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic003G095900--Sobic006G088200 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic010G112100 Sobic010G112100 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic002G179400 Sobic002G179400 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic001G493700--Sobic006G088200 Sobic001G275300--Sobic006G088200 Sobic001G275300--Sobic003G214600 Sobic007G000300 Sobic007G000300 Sobic001G275300--Sobic007G000300 Sobic001G275300--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic001G275300--Sobic006G056700 Sobic004G158400 Sobic004G158400 Sobic001G275300--Sobic004G158400 Sobic001G058200 Sobic001G058200 Sobic001G275300--Sobic001G058200 Sobic007G159900 Sobic007G159900 Sobic001G275300--Sobic007G159900 Sobic005G167700 Sobic005G167700 Sobic001G275300--Sobic005G167700 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic006G261400 Sobic006G261400 Sobic003G379200--Sobic006G261400 Sobic003G379200--Sobic009G044800 Sobic003G379200--Sobic006G088200 Sobic003G379200--Sobic003G360400 Sobic008G083200 Sobic008G083200 Sobic003G379200--Sobic008G083200 Sobic010G000800 Sobic010G000800 Sobic003G379200--Sobic010G000800 Sobic003G379200--Sobic001G354600 Sobic003G363700 Sobic003G363700 Sobic003G379200--Sobic003G363700 Sobic006G174850 Sobic006G174850 Sobic003G379200--Sobic006G174850 Sobic005G200800 Sobic005G200800 Sobic003G214600--Sobic005G200800 Sobic002G029100 Sobic002G029100 Sobic003G214600--Sobic002G029100 Sobic003G214600--Sobic006G088200 Sobic003G408600 Sobic003G408600 Sobic003G214600--Sobic003G408600 Sobic009G255600 Sobic009G255600 Sobic003G214600--Sobic009G255600 Sobic005G008800 Sobic005G008800 Sobic003G214600--Sobic005G008800 Sobic007G183300 Sobic007G183300 Sobic003G214600--Sobic007G183300 Sobic007G163100 Sobic007G163100 Sobic003G214600--Sobic007G163100 Sobic003G214600--Sobic003G360400 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic001G433800--Sobic004G242400 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic001G227400--Sobic009G044800 Sobic007G218000 Sobic007G218000 Sobic001G227400--Sobic007G218000 Sobic001G493200 Sobic001G493200 Sobic001G227400--Sobic001G493200 Sobic001G227400--Sobic001G493700 Sobic001G227400--Sobic006G088200 Sobic009G084900 Sobic009G084900 Sobic001G227400--Sobic009G084900 Sobic003G195000 Sobic003G195000 Sobic001G227400--Sobic003G195000 Sobic005G172500 Sobic005G172500 Sobic001G227400--Sobic005G172500 Sobic001G227400--Sobic001G289800
Octagon: transcription factors


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