Gene annotation
Transcriptome id Sobic.001G493700.1,Sobic.001G493700.2
Synonym Sb01g046140
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt A0A1Z5SBC7 , A0A1Z5SB82
Pfam PF00443 PF04780
Panther DB PTHR22975 PTHR22975:SF9
NCBI CDD KOG1887; Ubiquitin carboxyl-terminal hydrolase
KEGG Orthology -
Gene Ontology GO:0016579; protein deubiquitination


Orthologs (automatic annotation)
TAIR AT3G47890 : Ubiquitin carboxyl-terminal hydrolase-related protein
RAP-DB (Rice) LOC_Os03g06950.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053464 , Zm00025a000811
Brachypodium KQK23468
Barley HORVU4Hr1G074360.1 , HORVU4Hr1G074360.2 , HORVU4Hr1G074360.3 , HORVU4Hr1G074360.4 , HORVU4Hr1G074360.5 , HORVU4Hr1G074360.6 , HORVU4Hr1G074360.7 , HORVU4Hr1G074360.8 , HORVU4Hr1G074360.9 , HORVU4Hr1G074360.12 , HORVU4Hr1G074360.13 , HORVU4Hr1G074360.10 , HORVU4Hr1G074360.11 , HORVU4Hr1G074360.14 , HORVU4Hr1G074360.15
Wheat TraesCS4D02G280100 , TraesCS4D02G280100 , TraesCS4D02G280100 , TraesCS4D02G280100 , TraesCS4A02G022000 , TraesCS4A02G022000 , TraesCS4A02G022000 , TraesCS4B02G281400 , TraesCS4B02G281400 , TraesCS4A02G022000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G179400 DNA binding protein, putative, expressed -
2 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
3 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
4 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
5 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
6 Sobic.002G429300 importin subunit beta, putative, expressed -
7 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
8 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
9 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
10 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
11 Sobic.001G004400 - K14290: XPO1, exportin-1
12 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
13 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
14 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
15 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
16 Sobic.004G040500 expressed protein -
17 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
18 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
19 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
20 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80


Gene co-expression network
sample Sobic001G493700 Sobic001G493700 Sobic002G179400 Sobic002G179400 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic002G133300 Sobic002G133300 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic002G179400--Sobic001G493700 Sobic002G179400--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G179400--Sobic004G053500 Sobic002G179400--Sobic002G429300 Sobic002G179400--Sobic006G184900 Sobic003G233400 Sobic003G233400 Sobic002G179400--Sobic003G233400 Sobic002G179400--Sobic002G133300 Sobic001G065100 Sobic001G065100 Sobic002G179400--Sobic001G065100 Sobic004G322400 Sobic004G322400 Sobic002G179400--Sobic004G322400 Sobic005G162500--Sobic001G493700 Sobic005G162500--Sobic002G429300 Sobic001G370900 Sobic001G370900 Sobic005G162500--Sobic001G370900 Sobic005G162500--Sobic009G131300 Sobic008G088872 Sobic008G088872 Sobic005G162500--Sobic008G088872 Sobic003G186000 Sobic003G186000 Sobic005G162500--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic005G162500--Sobic008G098900 Sobic004G276400 Sobic004G276400 Sobic005G162500--Sobic004G276400 Sobic005G162500--Sobic002G335600 Sobic006G184900--Sobic002G335600 Sobic006G184900--Sobic002G429300 Sobic006G184900--Sobic008G088872 Sobic006G184900--Sobic002G042600 Sobic006G184900--Sobic001G370900 Sobic006G184900--Sobic009G131300 Sobic006G184900--Sobic001G493700 Sobic006G184900--Sobic002G179400 Sobic005G062200 Sobic005G062200 Sobic006G184900--Sobic005G062200 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic009G131300--Sobic002G429300 Sobic002G401500 Sobic002G401500 Sobic009G131300--Sobic002G401500 Sobic009G131300--Sobic005G162500 Sobic009G131300--Sobic008G088872 Sobic010G059500 Sobic010G059500 Sobic009G131300--Sobic010G059500 Sobic009G131300--Sobic008G098900 Sobic009G131300--Sobic006G184900 Sobic009G131300--Sobic001G493700 Sobic009G084900 Sobic009G084900 Sobic009G131300--Sobic009G084900 Sobic002G429300--Sobic009G131300 Sobic002G429300--Sobic005G162500 Sobic002G429300--Sobic006G184900 Sobic001G263600 Sobic001G263600 Sobic002G429300--Sobic001G263600 Sobic002G429300--Sobic002G042600 Sobic002G429300--Sobic008G098900 Sobic002G429300--Sobic001G493700 Sobic002G429300--Sobic002G335600 Sobic002G429300--Sobic008G088872 Sobic002G042600--Sobic001G065100 Sobic002G042600--Sobic006G184900 Sobic002G042600--Sobic008G098900 Sobic002G042600--Sobic002G401500 Sobic002G042600--Sobic002G179400 Sobic002G042600--Sobic004G322400 Sobic002G042600--Sobic002G429300 Sobic002G042600--Sobic008G088872 Sobic002G042600--Sobic001G370900 Sobic002G335600--Sobic006G184900 Sobic002G335600--Sobic005G162500 Sobic006G032300 Sobic006G032300 Sobic002G335600--Sobic006G032300 Sobic002G335600--Sobic009G131300 Sobic002G335600--Sobic002G429300 Sobic002G335600--Sobic001G493700 Sobic002G335600--Sobic008G088872 Sobic004G040500 Sobic004G040500 Sobic002G335600--Sobic004G040500 Sobic002G335600--Sobic004G053500 Sobic003G095900 Sobic003G095900 Sobic006G088200--Sobic003G095900 Sobic003G360400 Sobic003G360400 Sobic006G088200--Sobic003G360400 Sobic006G088200--Sobic001G493700 Sobic001G275300 Sobic001G275300 Sobic006G088200--Sobic001G275300 Sobic006G088200--Sobic002G133300 Sobic003G379200 Sobic003G379200 Sobic006G088200--Sobic003G379200 Sobic003G214600 Sobic003G214600 Sobic006G088200--Sobic003G214600 Sobic006G088200--Sobic001G433800 Sobic001G227400 Sobic001G227400 Sobic006G088200--Sobic001G227400
Octagon: transcription factors


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