Gene annotation
| Transcriptome id | Sobic.001G065100.1 |
|---|---|
| Synonym | Sb01g005920, ATCUL4, CUL4 |
| Functional annotation | cullin, putative, expressed |
| UniProt | C5WY66 |
| Pfam | PF10557 PF00888 |
| Panther DB | PTHR11932 PTHR11932:SF27 |
| NCBI CDD | - |
| KEGG Orthology | K10609; cullin 4 |
| Gene Ontology | GO:0006511; ubiquitin-dependent protein catabolic process |
Orthologs (automatic annotation)
| TAIR | AT5G46210 : cullin4 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g57290.1 : cullin, putative, expressed |
| MaizeGDB (Corn) | Zm00025a008477 , Zm00025a016624 |
| Brachypodium | PNT74003 , KQK12851 |
| Barley | HORVU5Hr1G103580.8 , HORVU5Hr1G103580.9 , HORVU5Hr1G103580.1 , HORVU5Hr1G103580.2 , HORVU5Hr1G103580.4 , HORVU5Hr1G103580.5 , HORVU5Hr1G103580.6 , HORVU5Hr1G103580.7 , HORVU5Hr1G103580.12 , HORVU5Hr1G103580.10 , HORVU5Hr1G103580.11 , HORVU5Hr1G103580.3 |
| Wheat | TraesCS5B02G427400 , TraesCS5D02G433700 , TraesCS5D02G433700 , TraesCS5B02G427400 , TraesCS5D02G433700 , TraesCS5A02G425300 , TraesCS5A02G425300 |
| Populus | - |
JBrowse
| Sobic.001G065100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G042600 | ubiquitin carboxyl-terminal hydrolase, putative, expressed | K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7 |
| 2 | Sobic.002G179400 | DNA binding protein, putative, expressed | - |
| 3 | Sobic.001G263600 | ubiquitin carboxyl-terminal hydrolase 5, putative, expressed | K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11 |
| 4 | Sobic.002G401500 | WD domain, G-beta repeat domain containing protein, expressed | K14005: protein transport protein SEC31 |
| 5 | Sobic.001G493700 | ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed | - |
| 6 | Sobic.008G088872 | - | - |
| 7 | Sobic.004G322400 | WD40-like, putative, expressed | - |
| 8 | Sobic.005G062200 | transmembrane 9 superfamily member, putative, expressed | K17087: transmembrane 9 superfamily member 3 |
| 9 | Sobic.003G296900 | expressed protein | - |
| 10 | Sobic.009G044800 | cullin, putative, expressed | K03347: CUL1, cullin 1 |
| 11 | Sobic.001G255800 | CPuORF15 - conserved peptide uORF-containing transcript, expressed | - |
| 12 | Sobic.004G053500 | HEAT repeat family protein, putative, expressed | K17263: CAND1, cullin-associated NEDD8-dissociated protein 1 |
| 13 | Sobic.002G429300 | importin subunit beta, putative, expressed | - |
| 14 | Sobic.003G360400 | ulp1 protease family protein, putative, expressed | K08596: sentrin-specific protease 7 |
| 15 | Sobic.002G142900 | immunoglobulin/major histocompatibility complex, putative, expressed | K12607: CCR4-NOT transcription complex subunit 10 |
| 16 | Sobic.004G265500 | SET domain protein SDG117, putative, expressed | - |
| 17 | Sobic.001G313700 | expressed protein | - |
| 18 | Sobic.010G059500 | pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed | K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22 |
| 19 | Sobic.001G382600 | expressed protein | - |
| 20 | Sobic.002G133300 | ZOS9-20 - C2H2 zinc finger protein, expressed | K14400: pre-mRNA cleavage complex 2 protein Pcf11 |
Gene co-expression network
Octagon: transcription factors
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