Gene annotation
Transcriptome id Sobic.001G313700.3,Sobic.001G313700.1,Sobic.001G313700.2
Synonym
Functional annotation expressed protein
UniProt A0A1Z5S8R7 , A0A1Z5S8I4
Pfam -
Panther DB PTHR34361 PTHR34361:SF2 PTHR34361 PTHR34361:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g39200.1,LOC_Os10g39200.2 : expressed protein
MaizeGDB (Corn) Zm00025a003167
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G313700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
2 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
3 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
4 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
5 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
6 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
7 Sobic.002G154000 EDM2, putative, expressed -
8 Sobic.008G099800 expressed protein -
9 Sobic.001G457900 expressed protein -
10 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
11 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
12 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
13 Sobic.007G133700 expressed protein -
14 Sobic.007G063000 expressed protein -
15 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
16 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
17 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
18 Sobic.001G261501 - -
19 Sobic.001G540400 expressed protein -
20 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6


Gene co-expression network
sample Sobic001G313700 Sobic001G313700 Sobic003G360400 Sobic003G360400 Sobic001G313700--Sobic003G360400 Sobic002G045600 Sobic002G045600 Sobic001G313700--Sobic002G045600 Sobic009G044800 Sobic009G044800 Sobic001G313700--Sobic009G044800 Sobic010G112100 Sobic010G112100 Sobic001G313700--Sobic010G112100 Sobic003G408600 Sobic003G408600 Sobic001G313700--Sobic003G408600 Sobic001G273700 Sobic001G273700 Sobic001G313700--Sobic001G273700 Sobic002G154000 Sobic002G154000 Sobic001G313700--Sobic002G154000 Sobic008G099800 Sobic008G099800 Sobic001G313700--Sobic008G099800 Sobic001G457900 Sobic001G457900 Sobic001G313700--Sobic001G457900 Sobic003G360400--Sobic010G112100 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic001G433800 Sobic001G433800 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic002G045600--Sobic009G044800 Sobic007G163100 Sobic007G163100 Sobic002G045600--Sobic007G163100 Sobic002G045600--Sobic003G360400 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic001G207000 Sobic001G207000 Sobic002G045600--Sobic001G207000 Sobic003G422500 Sobic003G422500 Sobic002G045600--Sobic003G422500 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic004G242400 Sobic004G242400 Sobic010G112100--Sobic004G242400 Sobic010G112100--Sobic003G389200 Sobic003G408600--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic003G408600--Sobic005G112300 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic003G408600--Sobic002G045600 Sobic007G172200 Sobic007G172200 Sobic001G273700--Sobic007G172200 Sobic001G263600 Sobic001G263600 Sobic001G273700--Sobic001G263600 Sobic001G273700--Sobic008G099800 Sobic001G347500 Sobic001G347500 Sobic001G273700--Sobic001G347500 Sobic007G133700 Sobic007G133700 Sobic001G273700--Sobic007G133700 Sobic001G273700--Sobic007G163100 Sobic001G273700--Sobic001G457900 Sobic001G273700--Sobic001G313700 Sobic002G042600 Sobic002G042600 Sobic001G273700--Sobic002G042600 Sobic002G154000--Sobic003G360400 Sobic003G416700 Sobic003G416700 Sobic002G154000--Sobic003G416700 Sobic002G154000--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic002G154000--Sobic001G063700 Sobic010G001100 Sobic010G001100 Sobic002G154000--Sobic010G001100 Sobic001G461400 Sobic001G461400 Sobic002G154000--Sobic001G461400 Sobic002G154000--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic002G154000--Sobic004G048800 Sobic002G154000--Sobic007G063000 Sobic006G012500 Sobic006G012500 Sobic008G099800--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic008G099800--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic008G099800--Sobic004G135400 Sobic008G099800--Sobic001G347500 Sobic001G281100 Sobic001G281100 Sobic008G099800--Sobic001G281100 Sobic004G113400 Sobic004G113400 Sobic008G099800--Sobic004G113400 Sobic004G039600 Sobic004G039600 Sobic008G099800--Sobic004G039600 Sobic003G072200 Sobic003G072200 Sobic008G099800--Sobic003G072200 Sobic001G065000 Sobic001G065000 Sobic008G099800--Sobic001G065000 Sobic002G133300 Sobic002G133300 Sobic001G457900--Sobic002G133300 Sobic003G196300 Sobic003G196300 Sobic001G457900--Sobic003G196300 Sobic001G117200 Sobic001G117200 Sobic001G457900--Sobic001G117200 Sobic008G092600 Sobic008G092600 Sobic001G457900--Sobic008G092600 Sobic001G457900--Sobic001G273700 Sobic001G457900--Sobic003G072200 Sobic003G428100 Sobic003G428100 Sobic001G457900--Sobic003G428100 Sobic001G196500 Sobic001G196500 Sobic001G457900--Sobic001G196500 Sobic003G229500 Sobic003G229500 Sobic001G457900--Sobic003G229500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.