Gene annotation
Transcriptome id Sobic.001G273700.1
Synonym
Functional annotation tRNA-splicing endonuclease positive effector-related, putative, expressed
UniProt A0A1B6QLF6
Pfam PF13087 PF13086
Panther DB PTHR10887 PTHR10887:SF359
NCBI CDD KOG1801; tRNA-splicing endonuclease positive effector (SEN1)
KEGG Orthology K10706; SETX, senataxin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G30100 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os06g20500.1 : tRNA-splicing endonuclease positive effector-related, putative, expressed
MaizeGDB (Corn) Zm00025a003690 , Zm00025a018010
Brachypodium KQJ87976 , KQJ96153 , KQJ96152 , KQJ96151 , KQJ96150 , KQJ96146 , KQJ96147 , KQJ96148 , KQJ96149
Barley HORVU4Hr1G038750.9 , HORVU4Hr1G038750.8 , HORVU4Hr1G038750.1 , HORVU4Hr1G038750.3 , HORVU4Hr1G038750.2 , HORVU4Hr1G038750.4 , HORVU4Hr1G038750.7 , HORVU4Hr1G038750.6
Wheat TraesCS4D02G150900 , TraesCS4D02G150900 , TraesCS4B02G145400 , TraesCS4B02G145400 , TraesCS4B02G145400 , TraesCS1A02G135300 , TraesCS1A02G135300 , TraesCS1A02G135300 , TraesCS1D02G131500 , TraesCS1D02G131500 , TraesCS1D02G131500 , TraesCS1B02G150500 , TraesCS4A02G167500 , TraesCS1B02G150500 , TraesCS1B02G150500 , TraesCS1B02G150500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G172200 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed K18081: myotubularin-related protein 1/2
2 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
3 Sobic.008G099800 expressed protein -
4 Sobic.001G347500 expressed protein -
5 Sobic.007G133700 expressed protein -
6 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
7 Sobic.001G457900 expressed protein -
8 Sobic.001G313700 expressed protein -
9 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
10 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
11 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
12 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
13 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
14 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
15 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
16 Sobic.008G092600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
17 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
18 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1
19 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
20 Sobic.007G132100 myrosinase precursor, putative, expressed -


Gene co-expression network
sample Sobic001G273700 Sobic001G273700 Sobic007G172200 Sobic007G172200 Sobic001G273700--Sobic007G172200 Sobic001G263600 Sobic001G263600 Sobic001G273700--Sobic001G263600 Sobic008G099800 Sobic008G099800 Sobic001G273700--Sobic008G099800 Sobic001G347500 Sobic001G347500 Sobic001G273700--Sobic001G347500 Sobic007G133700 Sobic007G133700 Sobic001G273700--Sobic007G133700 Sobic007G163100 Sobic007G163100 Sobic001G273700--Sobic007G163100 Sobic001G457900 Sobic001G457900 Sobic001G273700--Sobic001G457900 Sobic001G313700 Sobic001G313700 Sobic001G273700--Sobic001G313700 Sobic002G042600 Sobic002G042600 Sobic001G273700--Sobic002G042600 Sobic007G172200--Sobic001G273700 Sobic001G370900 Sobic001G370900 Sobic007G172200--Sobic001G370900 Sobic007G172200--Sobic007G133700 Sobic003G118200 Sobic003G118200 Sobic007G172200--Sobic003G118200 Sobic009G256400 Sobic009G256400 Sobic007G172200--Sobic009G256400 Sobic003G422500 Sobic003G422500 Sobic007G172200--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic007G172200--Sobic005G001000 Sobic009G165700 Sobic009G165700 Sobic007G172200--Sobic009G165700 Sobic008G132600 Sobic008G132600 Sobic007G172200--Sobic008G132600 Sobic008G088872 Sobic008G088872 Sobic001G263600--Sobic008G088872 Sobic002G429300 Sobic002G429300 Sobic001G263600--Sobic002G429300 Sobic002G142900 Sobic002G142900 Sobic001G263600--Sobic002G142900 Sobic005G062200 Sobic005G062200 Sobic001G263600--Sobic005G062200 Sobic008G098900 Sobic008G098900 Sobic001G263600--Sobic008G098900 Sobic001G263600--Sobic002G042600 Sobic001G263600--Sobic001G273700 Sobic003G072200 Sobic003G072200 Sobic001G263600--Sobic003G072200 Sobic009G131300 Sobic009G131300 Sobic001G263600--Sobic009G131300 Sobic006G012500 Sobic006G012500 Sobic008G099800--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic008G099800--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic008G099800--Sobic004G135400 Sobic008G099800--Sobic001G347500 Sobic001G281100 Sobic001G281100 Sobic008G099800--Sobic001G281100 Sobic004G113400 Sobic004G113400 Sobic008G099800--Sobic004G113400 Sobic004G039600 Sobic004G039600 Sobic008G099800--Sobic004G039600 Sobic008G099800--Sobic003G072200 Sobic001G065000 Sobic001G065000 Sobic008G099800--Sobic001G065000 Sobic001G347500--Sobic003G072200 Sobic001G347500--Sobic008G099800 Sobic003G229500 Sobic003G229500 Sobic001G347500--Sobic003G229500 Sobic009G084900 Sobic009G084900 Sobic001G347500--Sobic009G084900 Sobic001G347500--Sobic001G273700 Sobic001G347500--Sobic001G534800 Sobic001G347500--Sobic006G012500 Sobic010G275500 Sobic010G275500 Sobic001G347500--Sobic010G275500 Sobic007G098500 Sobic007G098500 Sobic001G347500--Sobic007G098500 Sobic007G133700--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic007G133700--Sobic009G053900 Sobic002G146300 Sobic002G146300 Sobic007G133700--Sobic002G146300 Sobic007G133700--Sobic008G098900 Sobic007G133700--Sobic007G172200 Sobic007G133700--Sobic001G370900 Sobic007G075400 Sobic007G075400 Sobic007G133700--Sobic007G075400 Sobic003G196300 Sobic003G196300 Sobic007G133700--Sobic003G196300 Sobic007G133700--Sobic001G273700 Sobic003G408600 Sobic003G408600 Sobic007G163100--Sobic003G408600 Sobic008G118200 Sobic008G118200 Sobic007G163100--Sobic008G118200 Sobic002G045600 Sobic002G045600 Sobic007G163100--Sobic002G045600 Sobic001G117200 Sobic001G117200 Sobic007G163100--Sobic001G117200 Sobic007G163100--Sobic003G072200 Sobic007G163100--Sobic003G422500 Sobic001G540400 Sobic001G540400 Sobic007G163100--Sobic001G540400 Sobic001G289800 Sobic001G289800 Sobic007G163100--Sobic001G289800 Sobic007G163100--Sobic004G113400 Sobic002G133300 Sobic002G133300 Sobic001G457900--Sobic002G133300 Sobic001G457900--Sobic003G196300 Sobic001G457900--Sobic001G117200 Sobic008G092600 Sobic008G092600 Sobic001G457900--Sobic008G092600 Sobic001G457900--Sobic001G273700 Sobic001G457900--Sobic003G072200 Sobic003G428100 Sobic003G428100 Sobic001G457900--Sobic003G428100 Sobic001G196500 Sobic001G196500 Sobic001G457900--Sobic001G196500 Sobic001G457900--Sobic003G229500 Sobic003G360400 Sobic003G360400 Sobic001G313700--Sobic003G360400 Sobic001G313700--Sobic002G045600 Sobic009G044800 Sobic009G044800 Sobic001G313700--Sobic009G044800 Sobic010G112100 Sobic010G112100 Sobic001G313700--Sobic010G112100 Sobic001G313700--Sobic003G408600 Sobic001G313700--Sobic001G273700 Sobic002G154000 Sobic002G154000 Sobic001G313700--Sobic002G154000 Sobic001G313700--Sobic008G099800 Sobic001G313700--Sobic001G457900 Sobic001G065100 Sobic001G065100 Sobic002G042600--Sobic001G065100 Sobic006G184900 Sobic006G184900 Sobic002G042600--Sobic006G184900 Sobic002G042600--Sobic008G098900 Sobic002G401500 Sobic002G401500 Sobic002G042600--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic002G042600--Sobic002G179400 Sobic004G322400 Sobic004G322400 Sobic002G042600--Sobic004G322400 Sobic002G042600--Sobic002G429300 Sobic002G042600--Sobic008G088872 Sobic002G042600--Sobic001G370900
Octagon: transcription factors


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