Gene annotation
Transcriptome id Sobic.009G131300.1
Synonym Sb09g019760, PDR2, MIA
Functional annotation cation-transporting ATPase, putative, expressed
UniProt A0A1B6P8S6
Pfam PF12710 PF00122
Panther DB PTHR24093 PTHR24093:SF82
NCBI CDD -
KEGG Orthology K14950; ATP13A1, manganese-transporting P-type ATPase
Gene Ontology GO:0000166; nucleotide binding GO:0016887ATPase activity GO:0016021integral component of membrane GO:0006812cation transport


Orthologs (automatic annotation)
TAIR AT5G23630 : phosphate deficiency response 2
RAP-DB (Rice) LOC_Os05g33390.1 : cation-transporting ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a037495 , Zm00025a043646
Brachypodium KQK06344
Barley HORVU1Hr1G061420.18 , HORVU1Hr1G061420.19 , HORVU1Hr1G061420.12 , HORVU1Hr1G061420.13 , HORVU1Hr1G061420.10 , HORVU1Hr1G061420.11 , HORVU1Hr1G061420.16 , HORVU1Hr1G061420.17 , HORVU1Hr1G061420.14 , HORVU1Hr1G061420.15 , HORVU1Hr1G061420.23 , HORVU1Hr1G061420.22 , HORVU1Hr1G061420.21 , HORVU1Hr1G061420.20 , HORVU1Hr1G061420.27 , HORVU1Hr1G061420.26 , HORVU1Hr1G061420.25 , HORVU1Hr1G061420.24 , HORVU1Hr1G061420.28 , HORVU1Hr1G061420.1 , HORVU1Hr1G061420.2 , HORVU1Hr1G061420.3 , HORVU1Hr1G061420.4 , HORVU1Hr1G061420.5 , HORVU1Hr1G061420.6 , HORVU1Hr1G061420.7 , HORVU1Hr1G061420.8 , HORVU1Hr1G061420.9
Wheat TraesCS1D02G251500 , TraesCS1D02G251500 , TraesCS1B02G262600 , TraesCS1B02G262600 , TraesCS1B02G262600 , TraesCS1A02G251700 , TraesCS1A02G251700 , TraesCS1A02G251700 , TraesCS1A02G251700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G429300 importin subunit beta, putative, expressed -
2 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
3 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
4 Sobic.008G088872 - -
5 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
6 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
7 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
8 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
9 Sobic.009G084900 expressed protein -
10 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
11 Sobic.003G166750 - K15188: cyclin T
12 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
13 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
14 Sobic.004G322400 WD40-like, putative, expressed -
15 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
16 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
17 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
18 Sobic.009G201700 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
19 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -
20 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11


Gene co-expression network
sample Sobic009G131300 Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic009G131300--Sobic002G429300 Sobic002G401500 Sobic002G401500 Sobic009G131300--Sobic002G401500 Sobic005G162500 Sobic005G162500 Sobic009G131300--Sobic005G162500 Sobic008G088872 Sobic008G088872 Sobic009G131300--Sobic008G088872 Sobic010G059500 Sobic010G059500 Sobic009G131300--Sobic010G059500 Sobic008G098900 Sobic008G098900 Sobic009G131300--Sobic008G098900 Sobic006G184900 Sobic006G184900 Sobic009G131300--Sobic006G184900 Sobic001G493700 Sobic001G493700 Sobic009G131300--Sobic001G493700 Sobic009G084900 Sobic009G084900 Sobic009G131300--Sobic009G084900 Sobic002G429300--Sobic009G131300 Sobic002G429300--Sobic005G162500 Sobic002G429300--Sobic006G184900 Sobic001G263600 Sobic001G263600 Sobic002G429300--Sobic001G263600 Sobic002G042600 Sobic002G042600 Sobic002G429300--Sobic002G042600 Sobic002G429300--Sobic008G098900 Sobic002G429300--Sobic001G493700 Sobic002G335600 Sobic002G335600 Sobic002G429300--Sobic002G335600 Sobic002G429300--Sobic008G088872 Sobic004G322400 Sobic004G322400 Sobic002G401500--Sobic004G322400 Sobic002G401500--Sobic009G131300 Sobic002G401500--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G401500--Sobic004G053500 Sobic005G062200 Sobic005G062200 Sobic002G401500--Sobic005G062200 Sobic002G401500--Sobic002G429300 Sobic001G065100 Sobic001G065100 Sobic002G401500--Sobic001G065100 Sobic002G401500--Sobic008G088872 Sobic002G401500--Sobic001G263600 Sobic005G162500--Sobic001G493700 Sobic005G162500--Sobic002G429300 Sobic001G370900 Sobic001G370900 Sobic005G162500--Sobic001G370900 Sobic005G162500--Sobic009G131300 Sobic005G162500--Sobic008G088872 Sobic003G186000 Sobic003G186000 Sobic005G162500--Sobic003G186000 Sobic005G162500--Sobic008G098900 Sobic004G276400 Sobic004G276400 Sobic005G162500--Sobic004G276400 Sobic005G162500--Sobic002G335600 Sobic008G088872--Sobic005G162500 Sobic008G088872--Sobic001G370900 Sobic008G088872--Sobic009G131300 Sobic008G088872--Sobic006G184900 Sobic008G088872--Sobic005G062200 Sobic008G088872--Sobic001G263600 Sobic008G088872--Sobic002G042600 Sobic008G088872--Sobic002G429300 Sobic008G088872--Sobic002G335600 Sobic010G059500--Sobic009G084900 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic004G096400 Sobic004G096400 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic001G145400 Sobic001G145400 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic006G077200 Sobic006G077200 Sobic010G059500--Sobic006G077200 Sobic001G493200 Sobic001G493200 Sobic010G059500--Sobic001G493200 Sobic008G098900--Sobic001G370900 Sobic008G085300 Sobic008G085300 Sobic008G098900--Sobic008G085300 Sobic001G117200 Sobic001G117200 Sobic008G098900--Sobic001G117200 Sobic003G205200 Sobic003G205200 Sobic008G098900--Sobic003G205200 Sobic005G001000 Sobic005G001000 Sobic008G098900--Sobic005G001000 Sobic003G072200 Sobic003G072200 Sobic008G098900--Sobic003G072200 Sobic008G098900--Sobic005G162500 Sobic008G098900--Sobic002G042600 Sobic008G098900--Sobic004G276400 Sobic006G184900--Sobic002G335600 Sobic006G184900--Sobic002G429300 Sobic006G184900--Sobic008G088872 Sobic006G184900--Sobic002G042600 Sobic006G184900--Sobic001G370900 Sobic006G184900--Sobic009G131300 Sobic006G184900--Sobic001G493700 Sobic002G179400 Sobic002G179400 Sobic006G184900--Sobic002G179400 Sobic006G184900--Sobic005G062200 Sobic001G493700--Sobic002G179400 Sobic001G493700--Sobic005G162500 Sobic001G493700--Sobic006G184900 Sobic002G133300 Sobic002G133300 Sobic001G493700--Sobic002G133300 Sobic001G493700--Sobic009G131300 Sobic001G493700--Sobic002G429300 Sobic001G493700--Sobic002G042600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic009G084900--Sobic010G059500 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G084900--Sobic009G131300 Sobic009G084900--Sobic002G133300 Sobic009G084900--Sobic006G077200 Sobic008G082500 Sobic008G082500 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100
Octagon: transcription factors


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