Gene annotation
Transcriptome id Sobic.002G042600.1,Sobic.002G042600.2
Synonym Sb02g003660, UBP12
Functional annotation ubiquitin carboxyl-terminal hydrolase, putative, expressed
UniProt A0A1B6Q946 , A0A1B6Q955
Pfam PF00917 PF13423 PF14533 PF12436
Panther DB PTHR24006 PTHR24006:SF445
NCBI CDD -
KEGG Orthology K11838; USP7, ubiquitin carboxyl-terminal hydrolase 7
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G06600 : ubiquitin-specific protease 12
RAP-DB (Rice) LOC_Os07g06950.1 : ubiquitin carboxyl-terminal hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a016124 , Zm00025a045074 , Zm00025a027384
Brachypodium KQK20789 , PNT77008
Barley HORVU2Hr1G058700.32 , HORVU2Hr1G058700.33 , HORVU2Hr1G058700.30 , HORVU2Hr1G058700.31 , HORVU2Hr1G058700.34 , HORVU2Hr1G058700.35 , HORVU2Hr1G058700.2 , HORVU2Hr1G058700.3 , HORVU2Hr1G058700.1 , HORVU2Hr1G058700.6 , HORVU2Hr1G058700.7 , HORVU2Hr1G058700.4 , HORVU2Hr1G058700.5 , HORVU2Hr1G058700.8 , HORVU2Hr1G058700.9 , HORVU2Hr1G058700.10 , HORVU2Hr1G058700.11 , HORVU2Hr1G058700.12 , HORVU2Hr1G058700.13 , HORVU2Hr1G058700.14 , HORVU2Hr1G058700.15 , HORVU2Hr1G058700.16 , HORVU2Hr1G058700.17 , HORVU2Hr1G058700.18 , HORVU2Hr1G058700.19 , HORVU2Hr1G058700.25 , HORVU2Hr1G058700.24 , HORVU2Hr1G058700.27 , HORVU2Hr1G058700.21 , HORVU2Hr1G058700.20 , HORVU2Hr1G058700.23 , HORVU2Hr1G058700.22 , HORVU2Hr1G058700.29 , HORVU2Hr1G058700.28 , HORVU2Hr1G058700.26
Wheat TraesCS2B02G263500 , TraesCS2B02G263500 , TraesCS2B02G263500 , TraesCS2B02G263500 , TraesCS2A02G246800 , TraesCS2A02G246800 , TraesCS2A02G246800 , TraesCS2A02G246800 , TraesCS2A02G246800 , TraesCS2D02G249100 , TraesCS2D02G249100 , TraesCS2D02G249100 , TraesCS2D02G249100
Populus PNT22088 , PNT22089 , PNT22086 , PNT22087 , PNT22085 , PNT18496 , PNT18497 , PNT18498 , PNT18499


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cDNA sequences
Sobic.002G042600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
2 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
3 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
4 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
5 Sobic.002G179400 DNA binding protein, putative, expressed -
6 Sobic.004G322400 WD40-like, putative, expressed -
7 Sobic.002G429300 importin subunit beta, putative, expressed -
8 Sobic.008G088872 - -
9 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
10 Sobic.010G148932 - -
11 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
12 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
13 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
14 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
15 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
16 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
17 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
18 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
19 Sobic.003G163200 expressed protein K11654: SMARCA5, SNF2H, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
20 Sobic.007G062800 SET domain containing protein, expressed -


Gene co-expression network
sample Sobic002G042600 Sobic002G042600 Sobic001G065100 Sobic001G065100 Sobic002G042600--Sobic001G065100 Sobic006G184900 Sobic006G184900 Sobic002G042600--Sobic006G184900 Sobic008G098900 Sobic008G098900 Sobic002G042600--Sobic008G098900 Sobic002G401500 Sobic002G401500 Sobic002G042600--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic002G042600--Sobic002G179400 Sobic004G322400 Sobic004G322400 Sobic002G042600--Sobic004G322400 Sobic002G429300 Sobic002G429300 Sobic002G042600--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic002G042600--Sobic008G088872 Sobic001G370900 Sobic001G370900 Sobic002G042600--Sobic001G370900 Sobic001G065100--Sobic002G042600 Sobic001G065100--Sobic002G179400 Sobic001G263600 Sobic001G263600 Sobic001G065100--Sobic001G263600 Sobic001G065100--Sobic002G401500 Sobic001G493700 Sobic001G493700 Sobic001G065100--Sobic001G493700 Sobic001G065100--Sobic008G088872 Sobic001G065100--Sobic004G322400 Sobic005G062200 Sobic005G062200 Sobic001G065100--Sobic005G062200 Sobic003G296900 Sobic003G296900 Sobic001G065100--Sobic003G296900 Sobic002G335600 Sobic002G335600 Sobic006G184900--Sobic002G335600 Sobic006G184900--Sobic002G429300 Sobic006G184900--Sobic008G088872 Sobic006G184900--Sobic002G042600 Sobic006G184900--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic006G184900--Sobic009G131300 Sobic006G184900--Sobic001G493700 Sobic006G184900--Sobic002G179400 Sobic006G184900--Sobic005G062200 Sobic008G098900--Sobic001G370900 Sobic008G085300 Sobic008G085300 Sobic008G098900--Sobic008G085300 Sobic001G117200 Sobic001G117200 Sobic008G098900--Sobic001G117200 Sobic003G205200 Sobic003G205200 Sobic008G098900--Sobic003G205200 Sobic005G001000 Sobic005G001000 Sobic008G098900--Sobic005G001000 Sobic003G072200 Sobic003G072200 Sobic008G098900--Sobic003G072200 Sobic005G162500 Sobic005G162500 Sobic008G098900--Sobic005G162500 Sobic008G098900--Sobic002G042600 Sobic004G276400 Sobic004G276400 Sobic008G098900--Sobic004G276400 Sobic002G401500--Sobic004G322400 Sobic002G401500--Sobic009G131300 Sobic002G401500--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G401500--Sobic004G053500 Sobic002G401500--Sobic005G062200 Sobic002G401500--Sobic002G429300 Sobic002G401500--Sobic001G065100 Sobic002G401500--Sobic008G088872 Sobic002G401500--Sobic001G263600 Sobic002G179400--Sobic001G493700 Sobic002G179400--Sobic002G042600 Sobic002G179400--Sobic004G053500 Sobic002G179400--Sobic002G429300 Sobic002G179400--Sobic006G184900 Sobic003G233400 Sobic003G233400 Sobic002G179400--Sobic003G233400 Sobic002G133300 Sobic002G133300 Sobic002G179400--Sobic002G133300 Sobic002G179400--Sobic001G065100 Sobic002G179400--Sobic004G322400 Sobic004G322400--Sobic002G401500 Sobic004G322400--Sobic002G042600 Sobic004G322400--Sobic009G131300 Sobic010G223100 Sobic010G223100 Sobic004G322400--Sobic010G223100 Sobic008G124800 Sobic008G124800 Sobic004G322400--Sobic008G124800 Sobic004G322400--Sobic002G179400 Sobic010G059500 Sobic010G059500 Sobic004G322400--Sobic010G059500 Sobic004G322400--Sobic001G065100 Sobic010G275500 Sobic010G275500 Sobic004G322400--Sobic010G275500 Sobic002G429300--Sobic009G131300 Sobic002G429300--Sobic005G162500 Sobic002G429300--Sobic006G184900 Sobic002G429300--Sobic001G263600 Sobic002G429300--Sobic002G042600 Sobic002G429300--Sobic008G098900 Sobic002G429300--Sobic001G493700 Sobic002G429300--Sobic002G335600 Sobic002G429300--Sobic008G088872 Sobic008G088872--Sobic005G162500 Sobic008G088872--Sobic001G370900 Sobic008G088872--Sobic009G131300 Sobic008G088872--Sobic006G184900 Sobic008G088872--Sobic005G062200 Sobic008G088872--Sobic001G263600 Sobic008G088872--Sobic002G042600 Sobic008G088872--Sobic002G429300 Sobic008G088872--Sobic002G335600 Sobic001G370900--Sobic008G098900 Sobic001G370900--Sobic005G001000 Sobic009G256400 Sobic009G256400 Sobic001G370900--Sobic009G256400 Sobic002G146300 Sobic002G146300 Sobic001G370900--Sobic002G146300 Sobic001G370900--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic001G370900--Sobic001G194200 Sobic001G370900--Sobic004G276400 Sobic008G001200 Sobic008G001200 Sobic001G370900--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic001G370900--Sobic001G457800
Octagon: transcription factors


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