Gene annotation
Transcriptome id Sobic.001G370900.2
Synonym ATINO80, Sb01g035270, INO80
Functional annotation expressed protein
UniProt A0A1Z5S9H1
Pfam PF04851 PF00271 PF13892
Panther DB PTHR10799 PTHR10799:SF757
NCBI CDD -
KEGG Orthology K11665; INO80, DNA helicase INO80
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding GO:0016817hydrolase activity, acting on acid anhydrides


Orthologs (automatic annotation)
TAIR AT3G57300 : INO80 ortholog
RAP-DB (Rice) LOC_Os03g22900.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002482 , Zm00025a052367
Brachypodium KQK21673
Barley HORVU4Hr1G046140.5 , HORVU4Hr1G046140.4 , HORVU4Hr1G046140.7 , HORVU4Hr1G046140.6 , HORVU4Hr1G046140.1 , HORVU4Hr1G046140.3 , HORVU4Hr1G046140.2 , HORVU4Hr1G046140.9 , HORVU4Hr1G046140.8 , HORVU4Hr1G046140.11 , HORVU4Hr1G046140.10 , HORVU4Hr1G046140.13 , HORVU4Hr1G046140.12 , HORVU4Hr1G046140.15 , HORVU4Hr1G046140.14 , HORVU4Hr1G046140.17 , HORVU4Hr1G046140.16 , HORVU4Hr1G046140.19 , HORVU4Hr1G046140.18
Wheat TraesCS4D02G159900 , TraesCS4D02G159900 , TraesCS4D02G159900 , TraesCS4D02G159900 , TraesCS4A02G147000 , TraesCS4A02G147000 , TraesCS4A02G147000 , TraesCS4B02G162000 , TraesCS4A02G147000 , TraesCS4A02G147000
Populus PNT29744 , PNT29745 , PNT29746 , PNT29747 , PNT29748 , PNT29749


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cDNA sequences
Sobic.001G370900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
2 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
3 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
4 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
5 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
6 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
7 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
8 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
9 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
10 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
11 Sobic.003G166750 - K15188: cyclin T
12 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
13 Sobic.008G088872 - -
14 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
15 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.001G289800 BAH domain containing protein, putative, expressed -
17 Sobic.003G422500 expressed protein -
18 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
19 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
20 Sobic.007G172200 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed K18081: myotubularin-related protein 1/2


Gene co-expression network
sample Sobic001G370900 Sobic001G370900 Sobic008G098900 Sobic008G098900 Sobic001G370900--Sobic008G098900 Sobic005G001000 Sobic005G001000 Sobic001G370900--Sobic005G001000 Sobic009G256400 Sobic009G256400 Sobic001G370900--Sobic009G256400 Sobic002G146300 Sobic002G146300 Sobic001G370900--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic001G370900--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic001G370900--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic001G370900--Sobic004G276400 Sobic008G001200 Sobic008G001200 Sobic001G370900--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic001G370900--Sobic001G457800 Sobic008G098900--Sobic001G370900 Sobic008G085300 Sobic008G085300 Sobic008G098900--Sobic008G085300 Sobic001G117200 Sobic001G117200 Sobic008G098900--Sobic001G117200 Sobic008G098900--Sobic003G205200 Sobic008G098900--Sobic005G001000 Sobic003G072200 Sobic003G072200 Sobic008G098900--Sobic003G072200 Sobic005G162500 Sobic005G162500 Sobic008G098900--Sobic005G162500 Sobic002G042600 Sobic002G042600 Sobic008G098900--Sobic002G042600 Sobic008G098900--Sobic004G276400 Sobic005G001000--Sobic001G194200 Sobic002G008900 Sobic002G008900 Sobic005G001000--Sobic002G008900 Sobic005G001000--Sobic001G370900 Sobic005G001000--Sobic003G205200 Sobic004G291900 Sobic004G291900 Sobic005G001000--Sobic004G291900 Sobic003G186000 Sobic003G186000 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic003G422500 Sobic003G422500 Sobic005G001000--Sobic003G422500 Sobic005G001000--Sobic009G256400 Sobic009G256400--Sobic001G457800 Sobic009G256400--Sobic008G001200 Sobic009G256400--Sobic001G370900 Sobic009G256400--Sobic004G291900 Sobic009G256400--Sobic005G001000 Sobic003G166750 Sobic003G166750 Sobic009G256400--Sobic003G166750 Sobic009G256400--Sobic001G194200 Sobic009G256400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic009G256400--Sobic010G010700 Sobic002G146300--Sobic003G205200 Sobic002G146300--Sobic001G370900 Sobic010G139600 Sobic010G139600 Sobic002G146300--Sobic010G139600 Sobic002G146300--Sobic005G001000 Sobic004G001500 Sobic004G001500 Sobic002G146300--Sobic004G001500 Sobic002G146300--Sobic008G001200 Sobic002G146300--Sobic001G194200 Sobic007G075400 Sobic007G075400 Sobic002G146300--Sobic007G075400 Sobic002G146300--Sobic009G256400 Sobic003G205200--Sobic002G146300 Sobic003G205200--Sobic005G001000 Sobic003G205200--Sobic008G001200 Sobic003G205200--Sobic001G370900 Sobic003G205200--Sobic003G186000 Sobic003G205200--Sobic010G139600 Sobic003G205200--Sobic004G276400 Sobic003G205200--Sobic001G194200 Sobic003G205200--Sobic008G098900 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic007G062800 Sobic007G062800 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic003G155100 Sobic003G155100 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic001G457800--Sobic009G256400 Sobic001G457800--Sobic008G001200 Sobic001G457800--Sobic001G370900 Sobic001G457800--Sobic003G166750 Sobic001G457800--Sobic003G155100 Sobic001G457800--Sobic004G001500 Sobic001G230000 Sobic001G230000 Sobic001G457800--Sobic001G230000 Sobic003G043200 Sobic003G043200 Sobic001G457800--Sobic003G043200 Sobic004G334300 Sobic004G334300 Sobic001G457800--Sobic004G334300
Octagon: transcription factors


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