Gene annotation
Transcriptome id Sobic.001G457800.1,Sobic.001G457800.2
Synonym Sb01g042980
Functional annotation U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
UniProt A0A1Z5SAT4 , A0A1B6QPN7
Pfam PF00271 PF00270 PF02889
Panther DB PTHR24075 PTHR24075:SF0
NCBI CDD -
KEGG Orthology K18663; activating signal cointegrator complex subunit 3
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0008565obsolete protein transporter activity


Orthologs (automatic annotation)
TAIR AT5G61140 : U5 small nuclear ribonucleoprotein helicase
RAP-DB (Rice) LOC_Os03g11470.1,LOC_Os02g01740.1 : U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed,DEAD/DEAH box helicase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001868 , Zm00025a053083
Brachypodium KQK22916 , PNT77893 , PNT77895 , PNT77894 , KQJ92834
Barley HORVU4Hr1G068170.18 , HORVU4Hr1G068170.19 , HORVU4Hr1G068170.12 , HORVU4Hr1G068170.13 , HORVU4Hr1G068170.10 , HORVU4Hr1G068170.11 , HORVU4Hr1G068170.16 , HORVU4Hr1G068170.17 , HORVU4Hr1G068170.14 , HORVU4Hr1G068170.15 , HORVU6Hr1G004350.6 , HORVU6Hr1G004350.7 , HORVU6Hr1G004350.1 , HORVU6Hr1G004350.2 , HORVU6Hr1G004350.3 , HORVU6Hr1G004350.8 , HORVU4Hr1G068170.23 , HORVU4Hr1G068170.22 , HORVU4Hr1G068170.21 , HORVU4Hr1G068170.20 , HORVU4Hr1G068170.27 , HORVU4Hr1G068170.26 , HORVU4Hr1G068170.25 , HORVU4Hr1G068170.24 , HORVU4Hr1G068170.29 , HORVU4Hr1G068170.28 , HORVU4Hr1G068170.31 , HORVU4Hr1G068170.32 , HORVU4Hr1G068170.33 , HORVU4Hr1G068170.1 , HORVU4Hr1G068170.2 , HORVU4Hr1G068170.3 , HORVU4Hr1G068170.4 , HORVU4Hr1G068170.5 , HORVU4Hr1G068170.6 , HORVU4Hr1G068170.7 , HORVU4Hr1G068170.8 , HORVU4Hr1G068170.9 , HORVU4Hr1G068170.30
Wheat TraesCS6A02G024900 , TraesCS4B02G247900 , TraesCS6B02G147700 , TraesCS4A02G057200 , TraesCS6B02G034100 , TraesCS6D02G028200 , TraesCS4D02G247100
Populus PNT00594 , PNT00595 , PNT00596 , PNT00597 , PNT00598


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
2 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
3 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
4 Sobic.003G166750 - K15188: cyclin T
5 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
6 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
7 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
8 Sobic.003G043200 EMB2410, putative, expressed -
9 Sobic.004G334300 ATMAK10, putative, expressed -
10 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
11 Sobic.004G244900 expressed protein -
12 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
13 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
14 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
15 Sobic.003G170700 expressed protein -
16 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
17 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
18 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
19 Sobic.008G088872 - -
20 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7


Gene co-expression network
sample Sobic001G457800 Sobic001G457800 Sobic009G256400 Sobic009G256400 Sobic001G457800--Sobic009G256400 Sobic008G001200 Sobic008G001200 Sobic001G457800--Sobic008G001200 Sobic001G370900 Sobic001G370900 Sobic001G457800--Sobic001G370900 Sobic003G166750 Sobic003G166750 Sobic001G457800--Sobic003G166750 Sobic003G155100 Sobic003G155100 Sobic001G457800--Sobic003G155100 Sobic004G001500 Sobic004G001500 Sobic001G457800--Sobic004G001500 Sobic001G230000 Sobic001G230000 Sobic001G457800--Sobic001G230000 Sobic003G043200 Sobic003G043200 Sobic001G457800--Sobic003G043200 Sobic004G334300 Sobic004G334300 Sobic001G457800--Sobic004G334300 Sobic009G256400--Sobic001G457800 Sobic009G256400--Sobic008G001200 Sobic009G256400--Sobic001G370900 Sobic004G291900 Sobic004G291900 Sobic009G256400--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic009G256400--Sobic005G001000 Sobic009G256400--Sobic003G166750 Sobic001G194200 Sobic001G194200 Sobic009G256400--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic009G256400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic009G256400--Sobic010G010700 Sobic008G001200--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic008G098900 Sobic008G098900 Sobic001G370900--Sobic008G098900 Sobic001G370900--Sobic005G001000 Sobic001G370900--Sobic009G256400 Sobic002G146300 Sobic002G146300 Sobic001G370900--Sobic002G146300 Sobic001G370900--Sobic003G205200 Sobic001G370900--Sobic001G194200 Sobic001G370900--Sobic004G276400 Sobic001G370900--Sobic008G001200 Sobic001G370900--Sobic001G457800 Sobic009G165700 Sobic009G165700 Sobic003G166750--Sobic009G165700 Sobic003G166750--Sobic008G001200 Sobic003G166750--Sobic009G256400 Sobic003G166750--Sobic001G370900 Sobic001G289800 Sobic001G289800 Sobic003G166750--Sobic001G289800 Sobic002G316600 Sobic002G316600 Sobic003G166750--Sobic002G316600 Sobic003G166750--Sobic001G194200 Sobic001G527800 Sobic001G527800 Sobic003G166750--Sobic001G527800 Sobic003G166750--Sobic001G457800 Sobic003G155100--Sobic008G001200 Sobic006G219600 Sobic006G219600 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic003G155100--Sobic009G256400 Sobic003G155100--Sobic004G291900 Sobic004G001500--Sobic002G146300 Sobic004G001500--Sobic003G043200 Sobic005G187300 Sobic005G187300 Sobic004G001500--Sobic005G187300 Sobic004G001500--Sobic001G370900 Sobic004G001500--Sobic001G457800 Sobic004G001500--Sobic009G256400 Sobic004G001500--Sobic003G166750 Sobic004G356700 Sobic004G356700 Sobic004G001500--Sobic004G356700 Sobic004G001500--Sobic001G527800 Sobic001G230000--Sobic010G206900 Sobic001G230000--Sobic003G155100 Sobic001G230000--Sobic008G001200 Sobic001G230000--Sobic004G276400 Sobic004G223000 Sobic004G223000 Sobic001G230000--Sobic004G223000 Sobic009G256300 Sobic009G256300 Sobic001G230000--Sobic009G256300 Sobic001G230000--Sobic010G010700 Sobic001G298900 Sobic001G298900 Sobic001G230000--Sobic001G298900 Sobic008G044100 Sobic008G044100 Sobic001G230000--Sobic008G044100 Sobic003G043200--Sobic004G001500 Sobic003G043200--Sobic009G256400 Sobic003G043200--Sobic001G457800 Sobic003G043200--Sobic001G370900 Sobic003G043200--Sobic002G146300 Sobic003G170700 Sobic003G170700 Sobic003G043200--Sobic003G170700 Sobic003G043200--Sobic008G001200 Sobic007G172200 Sobic007G172200 Sobic003G043200--Sobic007G172200 Sobic003G043200--Sobic003G166750 Sobic003G186000 Sobic003G186000 Sobic004G334300--Sobic003G186000 Sobic004G334300--Sobic008G001200 Sobic004G334300--Sobic001G457800 Sobic006G040500 Sobic006G040500 Sobic004G334300--Sobic006G040500 Sobic010G123600 Sobic010G123600 Sobic004G334300--Sobic010G123600 Sobic002G308700 Sobic002G308700 Sobic004G334300--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic004G334300--Sobic005G162500 Sobic004G244900 Sobic004G244900 Sobic004G334300--Sobic004G244900 Sobic004G334300--Sobic004G276400
Octagon: transcription factors


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