Gene annotation
Transcriptome id Sobic.001G230000.1
Synonym ATRX, CHR20
Functional annotation expressed protein
UniProt A0A1B6QKI5
Pfam PF04851 PF00271
Panther DB PTHR10799 PTHR10799:SF350
NCBI CDD -
KEGG Orthology K10779; transcriptional regulator ATRX
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G08600 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os10g31970.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006714
Brachypodium KQJ96959 , KQJ96960 , PNT67490 , PNT67491
Barley HORVU1Hr1G038370.8 , HORVU1Hr1G038370.9 , HORVU1Hr1G038370.2 , HORVU1Hr1G038370.3 , HORVU1Hr1G038370.1 , HORVU1Hr1G038370.6 , HORVU1Hr1G038370.7 , HORVU1Hr1G038370.4 , HORVU1Hr1G038370.5 , HORVU1Hr1G038370.18 , HORVU1Hr1G038370.19 , HORVU1Hr1G038370.10 , HORVU1Hr1G038370.11 , HORVU1Hr1G038370.12 , HORVU1Hr1G038370.13 , HORVU1Hr1G038370.14 , HORVU1Hr1G038370.15 , HORVU1Hr1G038370.16 , HORVU1Hr1G038370.17 , HORVU1Hr1G038370.21 , HORVU1Hr1G038370.20 , HORVU1Hr1G038370.23 , HORVU1Hr1G038370.22
Wheat TraesCS1B02G161400 , TraesCS1B02G161400 , TraesCS1B02G161400 , TraesCS1B02G161400 , TraesCS1B02G161400 , TraesCS1D02G143000 , TraesCS1A02G144000 , TraesCS1A02G144000 , TraesCS1A02G144000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
2 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
3 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
4 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
5 Sobic.004G223000 MIF4G domain containing protein, putative, expressed K14327: UPF2, regulator of nonsense transcripts 2
6 Sobic.009G256300 DNA binding protein, putative, expressed -
7 Sobic.010G010700 PHD-finger family protein, expressed -
8 Sobic.001G298900 agenet domain containing protein, putative, expressed -
9 Sobic.008G044100 expressed protein -
10 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
11 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
12 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
13 Sobic.003G388100 expressed protein -
14 Sobic.003G196300 DNA binding protein, putative, expressed -
15 Sobic.002G316600 expressed protein -
16 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
17 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
18 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
19 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
20 Sobic.007G063000 expressed protein -


Gene co-expression network
sample Sobic001G230000 Sobic001G230000 Sobic010G206900 Sobic010G206900 Sobic001G230000--Sobic010G206900 Sobic003G155100 Sobic003G155100 Sobic001G230000--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G230000--Sobic008G001200 Sobic004G276400 Sobic004G276400 Sobic001G230000--Sobic004G276400 Sobic004G223000 Sobic004G223000 Sobic001G230000--Sobic004G223000 Sobic009G256300 Sobic009G256300 Sobic001G230000--Sobic009G256300 Sobic010G010700 Sobic010G010700 Sobic001G230000--Sobic010G010700 Sobic001G298900 Sobic001G298900 Sobic001G230000--Sobic001G298900 Sobic008G044100 Sobic008G044100 Sobic001G230000--Sobic008G044100 Sobic010G206900--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic010G206900--Sobic001G365900 Sobic004G034900 Sobic004G034900 Sobic010G206900--Sobic004G034900 Sobic001G534700 Sobic001G534700 Sobic010G206900--Sobic001G534700 Sobic010G247800 Sobic010G247800 Sobic010G206900--Sobic010G247800 Sobic002G411600 Sobic002G411600 Sobic010G206900--Sobic002G411600 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic009G165700 Sobic009G165700 Sobic010G206900--Sobic009G165700 Sobic003G155100--Sobic008G001200 Sobic006G219600 Sobic006G219600 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic005G001000 Sobic005G001000 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic003G186000 Sobic003G186000 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic007G062800 Sobic007G062800 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic004G223000--Sobic001G230000 Sobic004G223000--Sobic010G206900 Sobic004G223000--Sobic003G186000 Sobic002G316600 Sobic002G316600 Sobic004G223000--Sobic002G316600 Sobic001G527800 Sobic001G527800 Sobic004G223000--Sobic001G527800 Sobic004G223000--Sobic007G062800 Sobic004G223000--Sobic004G276400 Sobic004G223000--Sobic010G010700 Sobic001G370900 Sobic001G370900 Sobic004G223000--Sobic001G370900 Sobic010G112100 Sobic010G112100 Sobic009G256300--Sobic010G112100 Sobic003G389200 Sobic003G389200 Sobic009G256300--Sobic003G389200 Sobic009G256300--Sobic004G242400 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic003G360400 Sobic003G360400 Sobic009G256300--Sobic003G360400 Sobic009G109200 Sobic009G109200 Sobic009G256300--Sobic009G109200 Sobic009G256300--Sobic004G276400 Sobic001G542400 Sobic001G542400 Sobic009G256300--Sobic001G542400 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000 Sobic001G298900--Sobic001G230000 Sobic001G298900--Sobic006G219600 Sobic002G198200 Sobic002G198200 Sobic001G298900--Sobic002G198200 Sobic004G178500 Sobic004G178500 Sobic001G298900--Sobic004G178500 Sobic001G298900--Sobic003G155100 Sobic001G298900--Sobic008G044100 Sobic003G388100 Sobic003G388100 Sobic001G298900--Sobic003G388100 Sobic005G142800 Sobic005G142800 Sobic001G298900--Sobic005G142800 Sobic004G146600 Sobic004G146600 Sobic001G298900--Sobic004G146600 Sobic008G044100--Sobic010G010700 Sobic004G134200 Sobic004G134200 Sobic008G044100--Sobic004G134200 Sobic001G374100 Sobic001G374100 Sobic008G044100--Sobic001G374100 Sobic008G044100--Sobic003G155100 Sobic008G044100--Sobic010G206900 Sobic008G044100--Sobic001G230000 Sobic008G044100--Sobic008G001200 Sobic008G044100--Sobic003G389200 Sobic008G044100--Sobic002G316600
Octagon: transcription factors


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