Gene annotation
Transcriptome id Sobic.002G316600.6,Sobic.002G316600.8,Sobic.002G316600.10,Sobic.002G316600.7,Sobic.002G316600.5,Sobic.002G316600.9,Sobic.002G316600.2,Sobic.002G316600.1
Synonym Sb02g034560, FRS5
Functional annotation expressed protein
UniProt A0A1B6QEH5 , A0A1B6QEF4
Pfam PF04434 PF03101 PF10551
Panther DB PTHR31669 PTHR31669:SF33
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT4G38180 : FAR1-related sequence 5
RAP-DB (Rice) LOC_Os06g07010.2,LOC_Os06g07010.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium KQK19457 , KQK19458
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G316600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
2 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
3 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
5 Sobic.001G529600 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
6 Sobic.003G166750 - K15188: cyclin T
7 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
8 Sobic.001G289800 BAH domain containing protein, putative, expressed -
9 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
10 Sobic.005G122700 PPR repeat domain containing protein, putative, expressed -
11 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
12 Sobic.004G223000 MIF4G domain containing protein, putative, expressed K14327: UPF2, regulator of nonsense transcripts 2
13 Sobic.010G010700 PHD-finger family protein, expressed -
14 Sobic.008G016300 expressed protein -
15 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
16 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
17 Sobic.008G044100 expressed protein -
18 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
19 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
20 Sobic.010G105200 SYD, putative, expressed -


Gene co-expression network
sample Sobic002G316600 Sobic002G316600 Sobic007G103100 Sobic007G103100 Sobic002G316600--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic002G316600--Sobic001G527800 Sobic003G186000 Sobic003G186000 Sobic002G316600--Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic002G316600--Sobic004G276400 Sobic001G529600 Sobic001G529600 Sobic002G316600--Sobic001G529600 Sobic003G166750 Sobic003G166750 Sobic002G316600--Sobic003G166750 Sobic001G194200 Sobic001G194200 Sobic002G316600--Sobic001G194200 Sobic001G289800 Sobic001G289800 Sobic002G316600--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic002G316600--Sobic010G079500 Sobic007G103100--Sobic002G316600 Sobic007G103100--Sobic003G186000 Sobic007G103100--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic007G103100--Sobic004G291900 Sobic007G103100--Sobic004G276400 Sobic007G103100--Sobic001G527800 Sobic003G205200 Sobic003G205200 Sobic007G103100--Sobic003G205200 Sobic002G275700 Sobic002G275700 Sobic007G103100--Sobic002G275700 Sobic006G055200 Sobic006G055200 Sobic007G103100--Sobic006G055200 Sobic001G527800--Sobic002G316600 Sobic008G001200 Sobic008G001200 Sobic001G527800--Sobic008G001200 Sobic001G527800--Sobic004G276400 Sobic010G206900 Sobic010G206900 Sobic001G527800--Sobic010G206900 Sobic001G527800--Sobic003G166750 Sobic001G527800--Sobic003G186000 Sobic003G196300 Sobic003G196300 Sobic001G527800--Sobic003G196300 Sobic001G527800--Sobic007G103100 Sobic010G123600 Sobic010G123600 Sobic001G527800--Sobic010G123600 Sobic003G186000--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic003G186000--Sobic010G105200 Sobic010G010700 Sobic010G010700 Sobic003G186000--Sobic010G010700 Sobic005G001000 Sobic005G001000 Sobic003G186000--Sobic005G001000 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic003G186000--Sobic007G103100 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G034900 Sobic004G034900 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic001G529600--Sobic002G316600 Sobic001G529600--Sobic010G079500 Sobic001G529600--Sobic003G166750 Sobic009G109200 Sobic009G109200 Sobic001G529600--Sobic009G109200 Sobic001G542500 Sobic001G542500 Sobic001G529600--Sobic001G542500 Sobic001G529600--Sobic001G289800 Sobic007G063000 Sobic007G063000 Sobic001G529600--Sobic007G063000 Sobic005G008800 Sobic005G008800 Sobic001G529600--Sobic005G008800 Sobic005G122700 Sobic005G122700 Sobic001G529600--Sobic005G122700 Sobic009G165700 Sobic009G165700 Sobic003G166750--Sobic009G165700 Sobic003G166750--Sobic008G001200 Sobic009G256400 Sobic009G256400 Sobic003G166750--Sobic009G256400 Sobic001G370900 Sobic001G370900 Sobic003G166750--Sobic001G370900 Sobic003G166750--Sobic001G289800 Sobic003G166750--Sobic002G316600 Sobic003G166750--Sobic001G194200 Sobic003G166750--Sobic001G527800 Sobic001G457800 Sobic001G457800 Sobic003G166750--Sobic001G457800 Sobic001G194200--Sobic004G291900 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic001G289800--Sobic001G289600 Sobic003G422500 Sobic003G422500 Sobic001G289800--Sobic003G422500 Sobic001G289800--Sobic001G194200 Sobic001G289800--Sobic004G291900 Sobic001G289800--Sobic004G034900 Sobic001G002000 Sobic001G002000 Sobic001G289800--Sobic001G002000 Sobic001G289800--Sobic010G010700 Sobic001G289800--Sobic007G062800 Sobic001G289800--Sobic005G001000 Sobic010G079500--Sobic001G529600 Sobic010G079500--Sobic002G316600 Sobic010G079500--Sobic009G109200 Sobic001G230000 Sobic001G230000 Sobic010G079500--Sobic001G230000 Sobic006G119400 Sobic006G119400 Sobic010G079500--Sobic006G119400 Sobic010G079500--Sobic001G527800 Sobic010G079500--Sobic003G196300 Sobic008G132900 Sobic008G132900 Sobic010G079500--Sobic008G132900 Sobic003G260400 Sobic003G260400 Sobic010G079500--Sobic003G260400
Octagon: transcription factors


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