Gene annotation
Transcriptome id Sobic.010G079500.1,Sobic.010G079500.3,Sobic.010G079500.2
Synonym
Functional annotation PHD-finger domain containing protein, putative, expressed
UniProt A0A194YHY6 , A0A1W0VS05 , A0A1W0VS06
Pfam PF13831 PF13832
Panther DB PTHR13793 PTHR13793:SF96
NCBI CDD KOG0954; PHD finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G77800 : PHD finger family protein
RAP-DB (Rice) LOC_Os06g10690.1 : PHD-finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a042500
Brachypodium KQK19052 , KQK19053 , PNT76231
Barley HORVU7Hr1G035360.12 , HORVU7Hr1G035360.13 , HORVU7Hr1G035360.10 , HORVU7Hr1G035360.11 , HORVU7Hr1G035360.16 , HORVU7Hr1G035360.17 , HORVU7Hr1G035360.14 , HORVU7Hr1G035360.15 , HORVU7Hr1G035360.18 , HORVU7Hr1G035360.19 , HORVU7Hr1G035360.29 , HORVU7Hr1G035360.28 , HORVU7Hr1G035360.23 , HORVU7Hr1G035360.22 , HORVU7Hr1G035360.21 , HORVU7Hr1G035360.20 , HORVU7Hr1G035360.27 , HORVU7Hr1G035360.26 , HORVU7Hr1G035360.25 , HORVU7Hr1G035360.24 , HORVU7Hr1G035360.8 , HORVU7Hr1G035360.9 , HORVU7Hr1G035360.3 , HORVU7Hr1G035360.4 , HORVU7Hr1G035360.5 , HORVU7Hr1G035360.6 , HORVU7Hr1G035360.7 , HORVU7Hr1G035360.30 , HORVU7Hr1G035360.31 , HORVU7Hr1G035360.32 , HORVU7Hr1G035360.33 , HORVU7Hr1G035360.36 , HORVU7Hr1G035360.37
Wheat TraesCS7A02G168900 , TraesCS7A02G168900 , TraesCS7B02G073800 , TraesCS7B02G073800 , TraesCS7B02G073800 , TraesCS7B02G073800 , TraesCS7D02G169800 , TraesCS7D02G169800 , TraesCS7D02G169800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G529600 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
2 Sobic.002G316600 expressed protein -
3 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
4 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
5 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
6 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
7 Sobic.003G196300 DNA binding protein, putative, expressed -
8 Sobic.008G132900 expressed protein -
9 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
10 Sobic.009G256300 DNA binding protein, putative, expressed -
11 Sobic.003G166750 - K15188: cyclin T
12 Sobic.002G399800 PWWP domain containing protein, expressed -
13 Sobic.003G101700 dnaJ domain containing protein, expressed -
14 Sobic.007G063000 expressed protein -
15 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
16 Sobic.004G223000 MIF4G domain containing protein, putative, expressed K14327: UPF2, regulator of nonsense transcripts 2
17 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
18 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
19 Sobic.001G400500 calpain, putative, expressed -
20 Sobic.010G094700 aberrant root formation protein 4, putative, expressed -


Gene co-expression network
sample Sobic010G079500 Sobic010G079500 Sobic001G529600 Sobic001G529600 Sobic010G079500--Sobic001G529600 Sobic002G316600 Sobic002G316600 Sobic010G079500--Sobic002G316600 Sobic009G109200 Sobic009G109200 Sobic010G079500--Sobic009G109200 Sobic001G230000 Sobic001G230000 Sobic010G079500--Sobic001G230000 Sobic006G119400 Sobic006G119400 Sobic010G079500--Sobic006G119400 Sobic001G527800 Sobic001G527800 Sobic010G079500--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic010G079500--Sobic003G196300 Sobic008G132900 Sobic008G132900 Sobic010G079500--Sobic008G132900 Sobic003G260400 Sobic003G260400 Sobic010G079500--Sobic003G260400 Sobic001G529600--Sobic002G316600 Sobic001G529600--Sobic010G079500 Sobic003G166750 Sobic003G166750 Sobic001G529600--Sobic003G166750 Sobic001G529600--Sobic009G109200 Sobic001G542500 Sobic001G542500 Sobic001G529600--Sobic001G542500 Sobic001G289800 Sobic001G289800 Sobic001G529600--Sobic001G289800 Sobic007G063000 Sobic007G063000 Sobic001G529600--Sobic007G063000 Sobic005G008800 Sobic005G008800 Sobic001G529600--Sobic005G008800 Sobic005G122700 Sobic005G122700 Sobic001G529600--Sobic005G122700 Sobic007G103100 Sobic007G103100 Sobic002G316600--Sobic007G103100 Sobic002G316600--Sobic001G527800 Sobic003G186000 Sobic003G186000 Sobic002G316600--Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic002G316600--Sobic004G276400 Sobic002G316600--Sobic001G529600 Sobic002G316600--Sobic003G166750 Sobic001G194200 Sobic001G194200 Sobic002G316600--Sobic001G194200 Sobic002G316600--Sobic001G289800 Sobic002G316600--Sobic010G079500 Sobic010G105200 Sobic010G105200 Sobic009G109200--Sobic010G105200 Sobic004G242400 Sobic004G242400 Sobic009G109200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic001G540400 Sobic001G540400 Sobic009G109200--Sobic001G540400 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic010G112100 Sobic010G112100 Sobic009G109200--Sobic010G112100 Sobic010G206900 Sobic010G206900 Sobic001G230000--Sobic010G206900 Sobic003G155100 Sobic003G155100 Sobic001G230000--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G230000--Sobic008G001200 Sobic001G230000--Sobic004G276400 Sobic004G223000 Sobic004G223000 Sobic001G230000--Sobic004G223000 Sobic009G256300 Sobic009G256300 Sobic001G230000--Sobic009G256300 Sobic010G010700 Sobic010G010700 Sobic001G230000--Sobic010G010700 Sobic001G298900 Sobic001G298900 Sobic001G230000--Sobic001G298900 Sobic008G044100 Sobic008G044100 Sobic001G230000--Sobic008G044100 Sobic006G119400--Sobic010G079500 Sobic005G142800 Sobic005G142800 Sobic006G119400--Sobic005G142800 Sobic004G107200 Sobic004G107200 Sobic006G119400--Sobic004G107200 Sobic010G053600 Sobic010G053600 Sobic006G119400--Sobic010G053600 Sobic002G043100 Sobic002G043100 Sobic006G119400--Sobic002G043100 Sobic006G049900 Sobic006G049900 Sobic006G119400--Sobic006G049900 Sobic006G119400--Sobic008G132900 Sobic008G016300 Sobic008G016300 Sobic006G119400--Sobic008G016300 Sobic006G119400--Sobic001G298900 Sobic001G527800--Sobic002G316600 Sobic001G527800--Sobic008G001200 Sobic001G527800--Sobic004G276400 Sobic001G527800--Sobic010G206900 Sobic001G527800--Sobic003G166750 Sobic001G527800--Sobic003G186000 Sobic001G527800--Sobic003G196300 Sobic001G527800--Sobic007G103100 Sobic010G123600 Sobic010G123600 Sobic001G527800--Sobic010G123600 Sobic003G196300--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic003G196300--Sobic004G034900 Sobic003G196300--Sobic001G194200 Sobic003G196300--Sobic007G063000 Sobic003G196300--Sobic001G289800 Sobic003G196300--Sobic004G276400 Sobic010G247800 Sobic010G247800 Sobic003G196300--Sobic010G247800 Sobic003G196300--Sobic009G256300 Sobic001G534700 Sobic001G534700 Sobic003G196300--Sobic001G534700 Sobic008G132900--Sobic009G256300 Sobic008G132900--Sobic009G109200 Sobic001G400500 Sobic001G400500 Sobic008G132900--Sobic001G400500 Sobic008G132900--Sobic010G079500 Sobic008G132900--Sobic010G112100 Sobic008G132900--Sobic001G542400 Sobic008G132900--Sobic010G105200 Sobic010G094700 Sobic010G094700 Sobic008G132900--Sobic010G094700 Sobic010G001100 Sobic010G001100 Sobic008G132900--Sobic010G001100 Sobic003G260400--Sobic010G079500 Sobic003G095900 Sobic003G095900 Sobic003G260400--Sobic003G095900 Sobic002G399800 Sobic002G399800 Sobic003G260400--Sobic002G399800 Sobic003G101700 Sobic003G101700 Sobic003G260400--Sobic003G101700 Sobic003G260400--Sobic002G316600 Sobic010G003400 Sobic010G003400 Sobic003G260400--Sobic010G003400 Sobic001G089600 Sobic001G089600 Sobic003G260400--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic003G260400--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic003G260400--Sobic001G393900
Octagon: transcription factors


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