Gene annotation
Transcriptome id Sobic.001G400500.2,Sobic.001G400500.1
Synonym EMB80, ATDEK1, EMB1275, Sb01g037910, DEK1
Functional annotation calpain, putative, expressed
UniProt C5WML7
Pfam PF01067 PF00648
Panther DB PTHR10183 PTHR10183:SF267
NCBI CDD KOG0045; Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily)
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0005622intracellular GO:0004198calcium-dependent cysteine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G55350 : calpain-type cysteine protease family
RAP-DB (Rice) LOC_Os02g47970.1 : calpain, putative, expressed
MaizeGDB (Corn) Zm00025a002076
Brachypodium KQK00972
Barley HORVU6Hr1G069450.10 , HORVU6Hr1G069450.8 , HORVU6Hr1G069450.9 , HORVU6Hr1G069450.2 , HORVU6Hr1G069450.3 , HORVU6Hr1G069450.1 , HORVU6Hr1G069450.6 , HORVU6Hr1G069450.7 , HORVU6Hr1G069450.4 , HORVU6Hr1G069450.5
Wheat TraesCS6B02G302900 , TraesCS6A02G275500 , TraesCS6D02G255800
Populus PNT46912 , PNT46913 , PNT46911 , PNT51943 , PNT51944


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cDNA sequences
Sobic.001G400500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
2 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
3 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
4 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
5 Sobic.001G063700 expressed protein -
6 Sobic.009G256300 DNA binding protein, putative, expressed -
7 Sobic.010G105200 SYD, putative, expressed -
8 Sobic.001G540400 expressed protein -
9 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
10 Sobic.008G132900 expressed protein -
11 Sobic.001G191700 expressed protein -
12 Sobic.001G299700 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
13 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
14 Sobic.007G062800 SET domain containing protein, expressed -
15 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
16 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
17 Sobic.010G001100 chromo domain containing protein, expressed -
18 Sobic.002G154000 EDM2, putative, expressed -
19 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
20 Sobic.002G397500 SAC3/GANP family protein, expressed -


Gene co-expression network
sample Sobic001G400500 Sobic001G400500 Sobic001G542400 Sobic001G542400 Sobic001G400500--Sobic001G542400 Sobic009G109200 Sobic009G109200 Sobic001G400500--Sobic009G109200 Sobic010G112100 Sobic010G112100 Sobic001G400500--Sobic010G112100 Sobic005G008800 Sobic005G008800 Sobic001G400500--Sobic005G008800 Sobic001G063700 Sobic001G063700 Sobic001G400500--Sobic001G063700 Sobic009G256300 Sobic009G256300 Sobic001G400500--Sobic009G256300 Sobic010G105200 Sobic010G105200 Sobic001G400500--Sobic010G105200 Sobic001G540400 Sobic001G540400 Sobic001G400500--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic001G400500--Sobic003G408600 Sobic001G299700 Sobic001G299700 Sobic001G542400--Sobic001G299700 Sobic001G542400--Sobic009G109200 Sobic001G542400--Sobic001G400500 Sobic001G542400--Sobic009G256300 Sobic001G542400--Sobic010G112100 Sobic004G276400 Sobic004G276400 Sobic001G542400--Sobic004G276400 Sobic001G542400--Sobic010G105200 Sobic001G542400--Sobic005G008800 Sobic008G001200 Sobic008G001200 Sobic001G542400--Sobic008G001200 Sobic009G109200--Sobic010G105200 Sobic004G242400 Sobic004G242400 Sobic009G109200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic009G109200--Sobic002G397500 Sobic009G109200--Sobic001G542400 Sobic009G109200--Sobic001G540400 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic010G112100--Sobic003G360400 Sobic005G112300 Sobic005G112300 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic001G433800 Sobic001G433800 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic005G008800--Sobic009G109200 Sobic001G461400 Sobic001G461400 Sobic001G063700--Sobic001G461400 Sobic001G063700--Sobic003G360400 Sobic001G063700--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic001G063700--Sobic002G154000 Sobic003G188400 Sobic003G188400 Sobic001G063700--Sobic003G188400 Sobic001G063700--Sobic001G433800 Sobic001G063700--Sobic009G256300 Sobic008G002500 Sobic008G002500 Sobic001G063700--Sobic008G002500 Sobic001G354600 Sobic001G354600 Sobic001G063700--Sobic001G354600 Sobic009G256300--Sobic010G112100 Sobic009G256300--Sobic003G389200 Sobic009G256300--Sobic004G242400 Sobic010G010700 Sobic010G010700 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic009G256300--Sobic003G360400 Sobic009G256300--Sobic009G109200 Sobic009G256300--Sobic004G276400 Sobic009G256300--Sobic001G542400 Sobic010G105200--Sobic004G276400 Sobic010G105200--Sobic009G109200 Sobic003G186000 Sobic003G186000 Sobic010G105200--Sobic003G186000 Sobic007G098500 Sobic007G098500 Sobic010G105200--Sobic007G098500 Sobic010G105200--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic010G105200--Sobic004G034900 Sobic010G105200--Sobic007G062800 Sobic010G105200--Sobic005G008800 Sobic010G105200--Sobic010G010700 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic003G422500 Sobic003G422500 Sobic001G540400--Sobic003G422500 Sobic001G540400--Sobic002G397500 Sobic001G540400--Sobic010G112100 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic003G408600--Sobic002G397500 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600
Octagon: transcription factors


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