Gene annotation
Transcriptome id Sobic.003G214600.1,Sobic.003G214600.2
Synonym LUG, RON2, Sb03g027380
Functional annotation transcriptional corepressor LEUNIG, putative, expressed
UniProt C5XQD2 , A0A1W0VYD7
Pfam PF08513 PF00400
Panther DB PTHR22847 PTHR22847:SF419
NCBI CDD KOG0266; WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G32551 : LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
RAP-DB (Rice) LOC_Os01g42260.1 : transcriptional corepressor LEUNIG, putative, expressed
MaizeGDB (Corn) Zm00025a028677 , Zm00025a028666 , Zm00025a038472
Brachypodium KQK08660 , KQK08658 , KQK08659 , KQK08656 , KQK08657
Barley HORVU3Hr1G053250.8 , HORVU3Hr1G053250.9 , HORVU3Hr1G053250.4 , HORVU3Hr1G053250.5 , HORVU3Hr1G053250.6 , HORVU3Hr1G053250.7 , HORVU3Hr1G053250.2 , HORVU3Hr1G053250.3 , HORVU3Hr1G053250.18 , HORVU3Hr1G053250.14 , HORVU3Hr1G053250.15 , HORVU3Hr1G053250.12 , HORVU3Hr1G053250.13 , HORVU3Hr1G053250.10 , HORVU3Hr1G053250.11 , HORVU3Hr1G053250.16 , HORVU3Hr1G053250.17
Wheat TraesCS3A02G217500 , TraesCS3B02G247800 , TraesCS3B02G247800 , TraesCS3B02G247800 , TraesCS3B02G247800 , TraesCS3A02G217500 , TraesCS3A02G217500 , TraesCS3A02G217500 , TraesCS3A02G217500 , TraesCS3A02G217500 , TraesCS3A02G217500 , TraesCS3A02G217500 , TraesCS3D02G234700 , TraesCS3A02G217600 , TraesCS3D02G219500 , TraesCS3D02G219500 , TraesCS3D02G219500 , TraesCS3D02G219500 , TraesCS3D02G219500 , TraesCS3D02G219500 , TraesCS3D02G219500 , TraesCS3A02G217600 , TraesCS3B02G247900 , TraesCS3B02G247900 , TraesCS3B02G247900 , TraesCS3B02G247900
Populus -


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cDNA sequences
Sobic.003G214600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G200800 homeobox domain containing protein, expressed -
2 Sobic.002G029100 GYF domain containing protein, putative, expressed -
3 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
4 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
5 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
6 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
7 Sobic.007G183300 expressed protein -
8 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
9 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
10 Sobic.001G400500 calpain, putative, expressed -
11 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
12 Sobic.001G063700 expressed protein -
13 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
14 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
15 Sobic.002G380200 calmodulin-binding transcription activator, putative, expressed -
16 Sobic.002G154000 EDM2, putative, expressed -
17 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
18 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
19 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
20 Sobic.006G096900 expressed protein -


Gene co-expression network
sample Sobic003G214600 Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic003G214600--Sobic005G200800 Sobic002G029100 Sobic002G029100 Sobic003G214600--Sobic002G029100 Sobic006G088200 Sobic006G088200 Sobic003G214600--Sobic006G088200 Sobic003G408600 Sobic003G408600 Sobic003G214600--Sobic003G408600 Sobic009G255600 Sobic009G255600 Sobic003G214600--Sobic009G255600 Sobic005G008800 Sobic005G008800 Sobic003G214600--Sobic005G008800 Sobic007G183300 Sobic007G183300 Sobic003G214600--Sobic007G183300 Sobic007G163100 Sobic007G163100 Sobic003G214600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic003G214600--Sobic003G360400 Sobic005G200800--Sobic003G214600 Sobic005G200800--Sobic007G183300 Sobic007G168300 Sobic007G168300 Sobic005G200800--Sobic007G168300 Sobic005G200800--Sobic002G029100 Sobic002G154000 Sobic002G154000 Sobic005G200800--Sobic002G154000 Sobic001G461400 Sobic001G461400 Sobic005G200800--Sobic001G461400 Sobic005G200800--Sobic009G255600 Sobic001G063700 Sobic001G063700 Sobic005G200800--Sobic001G063700 Sobic003G416700 Sobic003G416700 Sobic005G200800--Sobic003G416700 Sobic004G311400 Sobic004G311400 Sobic002G029100--Sobic004G311400 Sobic002G029100--Sobic003G214600 Sobic002G029100--Sobic005G200800 Sobic002G029100--Sobic009G255600 Sobic002G029100--Sobic007G183300 Sobic002G245000 Sobic002G245000 Sobic002G029100--Sobic002G245000 Sobic010G186600 Sobic010G186600 Sobic002G029100--Sobic010G186600 Sobic002G164200 Sobic002G164200 Sobic002G029100--Sobic002G164200 Sobic008G002300 Sobic008G002300 Sobic002G029100--Sobic008G002300 Sobic003G095900 Sobic003G095900 Sobic006G088200--Sobic003G095900 Sobic006G088200--Sobic003G360400 Sobic001G493700 Sobic001G493700 Sobic006G088200--Sobic001G493700 Sobic001G275300 Sobic001G275300 Sobic006G088200--Sobic001G275300 Sobic002G133300 Sobic002G133300 Sobic006G088200--Sobic002G133300 Sobic003G379200 Sobic003G379200 Sobic006G088200--Sobic003G379200 Sobic006G088200--Sobic003G214600 Sobic001G433800 Sobic001G433800 Sobic006G088200--Sobic001G433800 Sobic001G227400 Sobic001G227400 Sobic006G088200--Sobic001G227400 Sobic001G540400 Sobic001G540400 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic003G408600--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600 Sobic009G255600--Sobic010G186600 Sobic009G255600--Sobic003G416700 Sobic009G255600--Sobic003G214600 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic009G255600--Sobic002G029100 Sobic003G042400 Sobic003G042400 Sobic009G255600--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic009G255600--Sobic001G291800 Sobic009G255600--Sobic003G360400 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic007G183300--Sobic005G200800 Sobic002G145800 Sobic002G145800 Sobic007G183300--Sobic002G145800 Sobic007G183300--Sobic003G416700 Sobic007G183300--Sobic003G214600 Sobic010G279900 Sobic010G279900 Sobic007G183300--Sobic010G279900 Sobic007G183300--Sobic002G154000 Sobic005G220000 Sobic005G220000 Sobic007G183300--Sobic005G220000 Sobic007G183300--Sobic007G168300 Sobic001G051700 Sobic001G051700 Sobic007G183300--Sobic001G051700 Sobic007G163100--Sobic003G408600 Sobic008G118200 Sobic008G118200 Sobic007G163100--Sobic008G118200 Sobic007G163100--Sobic002G045600 Sobic001G117200 Sobic001G117200 Sobic007G163100--Sobic001G117200 Sobic003G072200 Sobic003G072200 Sobic007G163100--Sobic003G072200 Sobic003G422500 Sobic003G422500 Sobic007G163100--Sobic003G422500 Sobic007G163100--Sobic001G540400 Sobic007G163100--Sobic001G289800 Sobic004G113400 Sobic004G113400 Sobic007G163100--Sobic004G113400 Sobic003G360400--Sobic010G112100 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300
Octagon: transcription factors


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