Gene annotation
Transcriptome id Sobic.002G029100.1
Synonym Sb02g002600
Functional annotation GYF domain containing protein, putative, expressed
UniProt C5X9E8
Pfam PF02213
Panther DB PTHR14445 PTHR14445:SF43
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G42950 : GYF domain-containing protein
RAP-DB (Rice) LOC_Os07g04530.1 : GYF domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a044981
Brachypodium KQK20995
Barley -
Wheat TraesCS2B02G267200 , TraesCS2B02G267200 , TraesCS2D02G255400 , TraesCS2D02G255400 , TraesCS2A02G255000 , TraesCS2A02G255000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G311400 PHD-finger domain containing protein, putative, expressed -
2 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
3 Sobic.005G200800 homeobox domain containing protein, expressed -
4 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
5 Sobic.007G183300 expressed protein -
6 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
7 Sobic.010G186600 expressed protein -
8 Sobic.002G164200 PFT1, putative, expressed K15168: mediator of RNA polymerase II transcription subunit 25
9 Sobic.008G002300 ATSIZ1/SIZ1, putative, expressed -
10 Sobic.001G400500 calpain, putative, expressed -
11 Sobic.007G000200 expressed protein -
12 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
13 Sobic.003G052800 RST1, putative, expressed -
14 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
15 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
16 Sobic.007G018400 expressed protein -
17 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
18 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
19 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
20 Sobic.001G542450 - -


Gene co-expression network
sample Sobic002G029100 Sobic002G029100 Sobic004G311400 Sobic004G311400 Sobic002G029100--Sobic004G311400 Sobic003G214600 Sobic003G214600 Sobic002G029100--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic002G029100--Sobic005G200800 Sobic009G255600 Sobic009G255600 Sobic002G029100--Sobic009G255600 Sobic007G183300 Sobic007G183300 Sobic002G029100--Sobic007G183300 Sobic002G245000 Sobic002G245000 Sobic002G029100--Sobic002G245000 Sobic010G186600 Sobic010G186600 Sobic002G029100--Sobic010G186600 Sobic002G164200 Sobic002G164200 Sobic002G029100--Sobic002G164200 Sobic008G002300 Sobic008G002300 Sobic002G029100--Sobic008G002300 Sobic004G311400--Sobic002G029100 Sobic008G096000 Sobic008G096000 Sobic004G311400--Sobic008G096000 Sobic003G038100 Sobic003G038100 Sobic004G311400--Sobic003G038100 Sobic004G311400--Sobic005G200800 Sobic005G207500 Sobic005G207500 Sobic004G311400--Sobic005G207500 Sobic002G153700 Sobic002G153700 Sobic004G311400--Sobic002G153700 Sobic004G311400--Sobic002G245000 Sobic004G311400--Sobic003G214600 Sobic010G089400 Sobic010G089400 Sobic004G311400--Sobic010G089400 Sobic003G214600--Sobic005G200800 Sobic003G214600--Sobic002G029100 Sobic006G088200 Sobic006G088200 Sobic003G214600--Sobic006G088200 Sobic003G408600 Sobic003G408600 Sobic003G214600--Sobic003G408600 Sobic003G214600--Sobic009G255600 Sobic005G008800 Sobic005G008800 Sobic003G214600--Sobic005G008800 Sobic003G214600--Sobic007G183300 Sobic007G163100 Sobic007G163100 Sobic003G214600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic003G214600--Sobic003G360400 Sobic005G200800--Sobic003G214600 Sobic005G200800--Sobic007G183300 Sobic007G168300 Sobic007G168300 Sobic005G200800--Sobic007G168300 Sobic005G200800--Sobic002G029100 Sobic002G154000 Sobic002G154000 Sobic005G200800--Sobic002G154000 Sobic001G461400 Sobic001G461400 Sobic005G200800--Sobic001G461400 Sobic005G200800--Sobic009G255600 Sobic001G063700 Sobic001G063700 Sobic005G200800--Sobic001G063700 Sobic003G416700 Sobic003G416700 Sobic005G200800--Sobic003G416700 Sobic009G255600--Sobic010G186600 Sobic009G255600--Sobic003G416700 Sobic009G255600--Sobic003G214600 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic009G255600--Sobic002G029100 Sobic003G042400 Sobic003G042400 Sobic009G255600--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic009G255600--Sobic001G291800 Sobic009G255600--Sobic003G360400 Sobic007G183300--Sobic005G200800 Sobic002G145800 Sobic002G145800 Sobic007G183300--Sobic002G145800 Sobic007G183300--Sobic003G416700 Sobic007G183300--Sobic003G214600 Sobic010G279900 Sobic010G279900 Sobic007G183300--Sobic010G279900 Sobic007G183300--Sobic002G154000 Sobic005G220000 Sobic005G220000 Sobic007G183300--Sobic005G220000 Sobic007G183300--Sobic007G168300 Sobic001G051700 Sobic001G051700 Sobic007G183300--Sobic001G051700 Sobic003G212900 Sobic003G212900 Sobic002G245000--Sobic003G212900 Sobic007G000200 Sobic007G000200 Sobic002G245000--Sobic007G000200 Sobic002G245000--Sobic002G029100 Sobic001G542450 Sobic001G542450 Sobic002G245000--Sobic001G542450 Sobic001G135500 Sobic001G135500 Sobic002G245000--Sobic001G135500 Sobic003G062300 Sobic003G062300 Sobic002G245000--Sobic003G062300 Sobic002G245000--Sobic008G002300 Sobic009G020500 Sobic009G020500 Sobic002G245000--Sobic009G020500 Sobic006G032300 Sobic006G032300 Sobic002G245000--Sobic006G032300 Sobic010G186600--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic010G186600--Sobic008G147200 Sobic010G186600--Sobic002G145800 Sobic010G186600--Sobic001G291800 Sobic002G005000 Sobic002G005000 Sobic010G186600--Sobic002G005000 Sobic001G023800 Sobic001G023800 Sobic010G186600--Sobic001G023800 Sobic010G266500 Sobic010G266500 Sobic010G186600--Sobic010G266500 Sobic001G052400 Sobic001G052400 Sobic010G186600--Sobic001G052400 Sobic003G409200 Sobic003G409200 Sobic010G186600--Sobic003G409200 Sobic002G164200--Sobic007G183300 Sobic002G164200--Sobic003G062300 Sobic009G182600 Sobic009G182600 Sobic002G164200--Sobic009G182600 Sobic006G224800 Sobic006G224800 Sobic002G164200--Sobic006G224800 Sobic002G164200--Sobic001G051700 Sobic005G133800 Sobic005G133800 Sobic002G164200--Sobic005G133800 Sobic002G164200--Sobic002G029100 Sobic002G164200--Sobic007G000200 Sobic002G164200--Sobic005G200800 Sobic008G002300--Sobic007G000200 Sobic008G002300--Sobic001G542450 Sobic008G002300--Sobic006G088200 Sobic001G178300 Sobic001G178300 Sobic008G002300--Sobic001G178300 Sobic008G002300--Sobic006G032300 Sobic008G002300--Sobic002G029100 Sobic002G256700 Sobic002G256700 Sobic008G002300--Sobic002G256700 Sobic008G002300--Sobic002G245000 Sobic001G493700 Sobic001G493700 Sobic008G002300--Sobic001G493700
Octagon: transcription factors


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