Gene annotation
Transcriptome id Sobic.008G002300.2,Sobic.008G002300.1
Synonym SIZ1, Sb08g000380, ATSIZ1
Functional annotation ATSIZ1/SIZ1, putative, expressed
UniProt A0A1B6PBD6 , A0A1B6PAI0
Pfam PF02037 PF02891
Panther DB PTHR10782 PTHR10782:SF42
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G60410 : DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
RAP-DB (Rice) LOC_Os03g50980.1 : ATSIZ1/SIZ1, putative, expressed
MaizeGDB (Corn) Zm00025a028912
Brachypodium KQJ92612 , PNT64268 , PNT64269
Barley HORVU5Hr1G048360.8 , HORVU5Hr1G048360.9 , HORVU5Hr1G048360.2 , HORVU5Hr1G048360.3 , HORVU5Hr1G048360.1 , HORVU5Hr1G048360.4 , HORVU5Hr1G048360.5 , HORVU4Hr1G025080.13 , HORVU4Hr1G025080.12 , HORVU4Hr1G025080.11 , HORVU4Hr1G025080.10 , HORVU4Hr1G025080.17 , HORVU4Hr1G025080.16 , HORVU4Hr1G025080.15 , HORVU4Hr1G025080.14 , HORVU4Hr1G025080.19 , HORVU4Hr1G025080.18 , HORVU5Hr1G048360.18 , HORVU5Hr1G048360.10 , HORVU5Hr1G048360.11 , HORVU5Hr1G048360.12 , HORVU5Hr1G048360.13 , HORVU5Hr1G048360.15 , HORVU5Hr1G048360.16 , HORVU5Hr1G048360.17 , HORVU4Hr1G025080.3 , HORVU4Hr1G025080.2 , HORVU4Hr1G025080.7 , HORVU4Hr1G025080.6 , HORVU4Hr1G025080.5 , HORVU4Hr1G025080.4 , HORVU4Hr1G025080.8 , HORVU4Hr1G025080.30 , HORVU4Hr1G025080.28 , HORVU4Hr1G025080.29 , HORVU4Hr1G025080.22 , HORVU4Hr1G025080.23 , HORVU4Hr1G025080.20 , HORVU4Hr1G025080.21 , HORVU4Hr1G025080.26 , HORVU4Hr1G025080.27 , HORVU4Hr1G025080.24 , HORVU4Hr1G025080.25 , HORVU5Hr1G048360.19 , HORVU4Hr1G025080.1 , HORVU4Hr1G025080.9 , HORVU5Hr1G048360.14
Wheat TraesCS4B02G135700 , TraesCS4B02G135700 , TraesCS4A02G182900 , TraesCS4A02G182900 , TraesCS4A02G182900 , TraesCS5B02G153300 , TraesCS4D02G130400 , TraesCS4D02G130400 , TraesCS4D02G130400 , TraesCS5D02G160100 , TraesCS5A02G155100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G000200 expressed protein -
2 Sobic.001G542450 - -
3 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
4 Sobic.001G178300 DNA-binding protein, putative, expressed -
5 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
6 Sobic.002G029100 GYF domain containing protein, putative, expressed -
7 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
8 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
9 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
10 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
11 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
12 Sobic.005G200800 homeobox domain containing protein, expressed -
13 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
14 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
15 Sobic.006G224800 expressed protein -
16 Sobic.002G179400 DNA binding protein, putative, expressed -
17 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
18 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
19 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
20 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -


Gene co-expression network
sample Sobic008G002300 Sobic008G002300 Sobic007G000200 Sobic007G000200 Sobic008G002300--Sobic007G000200 Sobic001G542450 Sobic001G542450 Sobic008G002300--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic008G002300--Sobic006G088200 Sobic001G178300 Sobic001G178300 Sobic008G002300--Sobic001G178300 Sobic006G032300 Sobic006G032300 Sobic008G002300--Sobic006G032300 Sobic002G029100 Sobic002G029100 Sobic008G002300--Sobic002G029100 Sobic002G256700 Sobic002G256700 Sobic008G002300--Sobic002G256700 Sobic002G245000 Sobic002G245000 Sobic008G002300--Sobic002G245000 Sobic001G493700 Sobic001G493700 Sobic008G002300--Sobic001G493700 Sobic007G000200--Sobic006G032300 Sobic003G046300 Sobic003G046300 Sobic007G000200--Sobic003G046300 Sobic007G000200--Sobic008G002300 Sobic007G000200--Sobic002G245000 Sobic001G430400 Sobic001G430400 Sobic007G000200--Sobic001G430400 Sobic002G164200 Sobic002G164200 Sobic007G000200--Sobic002G164200 Sobic003G089000 Sobic003G089000 Sobic007G000200--Sobic003G089000 Sobic007G000200--Sobic001G542450 Sobic007G000200--Sobic006G088200 Sobic001G542450--Sobic008G002300 Sobic003G416700 Sobic003G416700 Sobic001G542450--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G542450--Sobic002G145800 Sobic003G217200 Sobic003G217200 Sobic001G542450--Sobic003G217200 Sobic003G062300 Sobic003G062300 Sobic001G542450--Sobic003G062300 Sobic006G224800 Sobic006G224800 Sobic001G542450--Sobic006G224800 Sobic002G295500 Sobic002G295500 Sobic001G542450--Sobic002G295500 Sobic001G461400 Sobic001G461400 Sobic001G542450--Sobic001G461400 Sobic006G166200 Sobic006G166200 Sobic001G542450--Sobic006G166200 Sobic003G095900 Sobic003G095900 Sobic006G088200--Sobic003G095900 Sobic003G360400 Sobic003G360400 Sobic006G088200--Sobic003G360400 Sobic006G088200--Sobic001G493700 Sobic001G275300 Sobic001G275300 Sobic006G088200--Sobic001G275300 Sobic002G133300 Sobic002G133300 Sobic006G088200--Sobic002G133300 Sobic003G379200 Sobic003G379200 Sobic006G088200--Sobic003G379200 Sobic003G214600 Sobic003G214600 Sobic006G088200--Sobic003G214600 Sobic001G433800 Sobic001G433800 Sobic006G088200--Sobic001G433800 Sobic001G227400 Sobic001G227400 Sobic006G088200--Sobic001G227400 Sobic001G178300--Sobic002G256700 Sobic001G178300--Sobic008G002300 Sobic006G250300 Sobic006G250300 Sobic001G178300--Sobic006G250300 Sobic004G131800 Sobic004G131800 Sobic001G178300--Sobic004G131800 Sobic001G178300--Sobic001G493700 Sobic001G178300--Sobic006G088200 Sobic001G178300--Sobic001G275300 Sobic006G056700 Sobic006G056700 Sobic001G178300--Sobic006G056700 Sobic001G537500 Sobic001G537500 Sobic001G178300--Sobic001G537500 Sobic002G335600 Sobic002G335600 Sobic006G032300--Sobic002G335600 Sobic008G088872 Sobic008G088872 Sobic006G032300--Sobic008G088872 Sobic004G053500 Sobic004G053500 Sobic006G032300--Sobic004G053500 Sobic007G018400 Sobic007G018400 Sobic006G032300--Sobic007G018400 Sobic001G273700 Sobic001G273700 Sobic006G032300--Sobic001G273700 Sobic002G042600 Sobic002G042600 Sobic006G032300--Sobic002G042600 Sobic001G191700 Sobic001G191700 Sobic006G032300--Sobic001G191700 Sobic009G131300 Sobic009G131300 Sobic006G032300--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic006G032300--Sobic002G429300 Sobic004G311400 Sobic004G311400 Sobic002G029100--Sobic004G311400 Sobic002G029100--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic002G029100--Sobic005G200800 Sobic009G255600 Sobic009G255600 Sobic002G029100--Sobic009G255600 Sobic007G183300 Sobic007G183300 Sobic002G029100--Sobic007G183300 Sobic002G029100--Sobic002G245000 Sobic010G186600 Sobic010G186600 Sobic002G029100--Sobic010G186600 Sobic002G029100--Sobic002G164200 Sobic002G029100--Sobic008G002300 Sobic003G104000 Sobic003G104000 Sobic002G256700--Sobic003G104000 Sobic002G256700--Sobic001G493700 Sobic007G054800 Sobic007G054800 Sobic002G256700--Sobic007G054800 Sobic001G251100 Sobic001G251100 Sobic002G256700--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic002G256700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G256700--Sobic004G131300 Sobic006G280000 Sobic006G280000 Sobic002G256700--Sobic006G280000 Sobic002G256700--Sobic002G133300 Sobic001G117200 Sobic001G117200 Sobic002G256700--Sobic001G117200 Sobic003G212900 Sobic003G212900 Sobic002G245000--Sobic003G212900 Sobic002G245000--Sobic007G000200 Sobic002G245000--Sobic002G029100 Sobic002G245000--Sobic001G542450 Sobic001G135500 Sobic001G135500 Sobic002G245000--Sobic001G135500 Sobic002G245000--Sobic003G062300 Sobic002G245000--Sobic008G002300 Sobic009G020500 Sobic009G020500 Sobic002G245000--Sobic009G020500 Sobic002G245000--Sobic006G032300 Sobic002G179400 Sobic002G179400 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic001G493700--Sobic009G131300 Sobic001G493700--Sobic002G429300 Sobic001G493700--Sobic002G042600 Sobic001G493700--Sobic002G335600 Sobic001G493700--Sobic006G088200
Octagon: transcription factors


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