Gene annotation
Transcriptome id Sobic.009G255600.1
Synonym DDB1A
Functional annotation cleavage and polyadenylation specificity factor, putative, expressed
UniProt A0A1B6PAL8
Pfam PF03178 PF10433
Panther DB PTHR10644
NCBI CDD -
KEGG Orthology K10610; DNA damage-binding protein 1
Gene Ontology GO:0005634; nucleus GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G05420 : damaged DNA binding protein 1A
RAP-DB (Rice) LOC_Os05g51480.1 : cleavage and polyadenylation specificity factor, putative, expressed
MaizeGDB (Corn) Zm00025a036774 , Zm00025a044756
Brachypodium PNT72272 , KQK04584
Barley HORVU3Hr1G050820.12 , HORVU3Hr1G050820.8 , HORVU3Hr1G050820.9 , HORVU3Hr1G050820.6 , HORVU3Hr1G050820.4 , HORVU3Hr1G050820.2 , HORVU3Hr1G050820.3 , HORVU3Hr1G050820.1 , HORVU3Hr1G050820.14 , HORVU3Hr1G050820.15 , HORVU3Hr1G050820.16 , HORVU3Hr1G050820.17 , HORVU3Hr1G050820.10 , HORVU3Hr1G050820.11 , HORVU7Hr1G056610.1 , HORVU3Hr1G050820.13 , HORVU3Hr1G050820.18 , HORVU3Hr1G050820.19 , HORVU3Hr1G050820.28 , HORVU3Hr1G050820.21 , HORVU3Hr1G050820.20 , HORVU3Hr1G050820.23 , HORVU3Hr1G050820.22 , HORVU3Hr1G050820.24 , HORVU3Hr1G050820.27 , HORVU3Hr1G050820.26 , HORVU1Hr1G094530.6 , HORVU1Hr1G094530.7 , HORVU1Hr1G094530.4 , HORVU1Hr1G094530.5 , HORVU1Hr1G094530.2 , HORVU1Hr1G094530.3 , HORVU1Hr1G094530.1 , HORVU1Hr1G094530.8
Wheat TraesCS3A02G210100 , TraesCS3A02G210100 , TraesCSU02G002300 , TraesCS1B02G473400 , TraesCS1D02G445700
Populus -


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cDNA sequences
Sobic.009G255600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G186600 expressed protein -
2 Sobic.003G416700 homeobox domain containing protein, expressed -
3 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
4 Sobic.005G200800 homeobox domain containing protein, expressed -
5 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
6 Sobic.002G029100 GYF domain containing protein, putative, expressed -
7 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
8 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
9 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
10 Sobic.010G118000 PHD-finger family protein, expressed K17586: PHD and RING finger domain-containing protein 1
11 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
12 Sobic.006G224800 expressed protein -
13 Sobic.002G154000 EDM2, putative, expressed -
14 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
15 Sobic.001G063700 expressed protein -
16 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
17 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
18 Sobic.007G183900 ubiquitin family protein, putative, expressed -
19 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
20 Sobic.001G051700 expressed protein -


Gene co-expression network
sample Sobic009G255600 Sobic009G255600 Sobic010G186600 Sobic010G186600 Sobic009G255600--Sobic010G186600 Sobic003G416700 Sobic003G416700 Sobic009G255600--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic009G255600--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic002G029100 Sobic002G029100 Sobic009G255600--Sobic002G029100 Sobic003G042400 Sobic003G042400 Sobic009G255600--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic009G255600--Sobic001G291800 Sobic003G360400 Sobic003G360400 Sobic009G255600--Sobic003G360400 Sobic010G186600--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic010G186600--Sobic008G147200 Sobic002G145800 Sobic002G145800 Sobic010G186600--Sobic002G145800 Sobic010G186600--Sobic001G291800 Sobic002G005000 Sobic002G005000 Sobic010G186600--Sobic002G005000 Sobic001G023800 Sobic001G023800 Sobic010G186600--Sobic001G023800 Sobic010G266500 Sobic010G266500 Sobic010G186600--Sobic010G266500 Sobic001G052400 Sobic001G052400 Sobic010G186600--Sobic001G052400 Sobic003G409200 Sobic003G409200 Sobic010G186600--Sobic003G409200 Sobic002G154000 Sobic002G154000 Sobic003G416700--Sobic002G154000 Sobic002G264200 Sobic002G264200 Sobic003G416700--Sobic002G264200 Sobic001G461400 Sobic001G461400 Sobic003G416700--Sobic001G461400 Sobic007G183900 Sobic007G183900 Sobic003G416700--Sobic007G183900 Sobic001G051700 Sobic001G051700 Sobic003G416700--Sobic001G051700 Sobic003G416700--Sobic003G360400 Sobic003G416700--Sobic009G119000 Sobic001G063700 Sobic001G063700 Sobic003G416700--Sobic001G063700 Sobic010G275500 Sobic010G275500 Sobic003G416700--Sobic010G275500 Sobic003G214600--Sobic005G200800 Sobic003G214600--Sobic002G029100 Sobic006G088200 Sobic006G088200 Sobic003G214600--Sobic006G088200 Sobic003G408600 Sobic003G408600 Sobic003G214600--Sobic003G408600 Sobic003G214600--Sobic009G255600 Sobic005G008800 Sobic005G008800 Sobic003G214600--Sobic005G008800 Sobic007G183300 Sobic007G183300 Sobic003G214600--Sobic007G183300 Sobic007G163100 Sobic007G163100 Sobic003G214600--Sobic007G163100 Sobic003G214600--Sobic003G360400 Sobic005G200800--Sobic003G214600 Sobic005G200800--Sobic007G183300 Sobic007G168300 Sobic007G168300 Sobic005G200800--Sobic007G168300 Sobic005G200800--Sobic002G029100 Sobic005G200800--Sobic002G154000 Sobic005G200800--Sobic001G461400 Sobic005G200800--Sobic009G255600 Sobic005G200800--Sobic001G063700 Sobic005G200800--Sobic003G416700 Sobic002G153700 Sobic002G153700 Sobic009G119000--Sobic002G153700 Sobic003G059750 Sobic003G059750 Sobic009G119000--Sobic003G059750 Sobic002G071500 Sobic002G071500 Sobic009G119000--Sobic002G071500 Sobic010G065300 Sobic010G065300 Sobic009G119000--Sobic010G065300 Sobic008G153000 Sobic008G153000 Sobic009G119000--Sobic008G153000 Sobic009G119000--Sobic010G275500 Sobic009G119000--Sobic003G416700 Sobic004G048800 Sobic004G048800 Sobic009G119000--Sobic004G048800 Sobic001G311500 Sobic001G311500 Sobic009G119000--Sobic001G311500 Sobic004G311400 Sobic004G311400 Sobic002G029100--Sobic004G311400 Sobic002G029100--Sobic003G214600 Sobic002G029100--Sobic005G200800 Sobic002G029100--Sobic009G255600 Sobic002G029100--Sobic007G183300 Sobic002G245000 Sobic002G245000 Sobic002G029100--Sobic002G245000 Sobic002G029100--Sobic010G186600 Sobic002G164200 Sobic002G164200 Sobic002G029100--Sobic002G164200 Sobic008G002300 Sobic008G002300 Sobic002G029100--Sobic008G002300 Sobic003G042400--Sobic007G168300 Sobic001G376900 Sobic001G376900 Sobic003G042400--Sobic001G376900 Sobic001G346900 Sobic001G346900 Sobic003G042400--Sobic001G346900 Sobic009G158100 Sobic009G158100 Sobic003G042400--Sobic009G158100 Sobic001G145400 Sobic001G145400 Sobic003G042400--Sobic001G145400 Sobic003G042400--Sobic001G052400 Sobic003G042400--Sobic008G147200 Sobic003G042400--Sobic009G255600 Sobic007G126500 Sobic007G126500 Sobic003G042400--Sobic007G126500 Sobic004G340400 Sobic004G340400 Sobic001G291800--Sobic004G340400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic001G291800--Sobic010G186600 Sobic001G291800--Sobic009G255600 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G168900 Sobic001G168900 Sobic001G291800--Sobic001G168900 Sobic010G112100 Sobic010G112100 Sobic003G360400--Sobic010G112100 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic001G433800 Sobic001G433800 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300
Octagon: transcription factors


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