Gene annotation
Transcriptome id Sobic.003G042400.1
Synonym HEN2, Sb03g003740
Functional annotation -
UniProt C5XMP5
Pfam PF00271 PF00270 PF08148 PF13234
Panther DB -
NCBI CDD -
KEGG Orthology K12598; MTR4, ATP-dependent RNA helicase DOB1
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G06990 : RNA helicase, ATP-dependent, SK12/DOB1 protein
RAP-DB (Rice) LOC_Os11g07500.1 : DSHCT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035768
Brachypodium KQJ89201
Barley HORVU2Hr1G028060.8 , HORVU2Hr1G028060.9 , HORVU2Hr1G028060.1 , HORVU2Hr1G028060.2 , HORVU2Hr1G028060.3 , HORVU2Hr1G028060.4 , HORVU2Hr1G028060.5 , HORVU2Hr1G028060.6 , HORVU2Hr1G028060.7 , HORVU4Hr1G018990.11 , HORVU4Hr1G018990.10 , HORVU2Hr1G028060.28 , HORVU4Hr1G018990.9 , HORVU4Hr1G018990.8 , HORVU4Hr1G018990.1 , HORVU4Hr1G018990.3 , HORVU4Hr1G018990.2 , HORVU4Hr1G018990.5 , HORVU4Hr1G018990.4 , HORVU4Hr1G018990.7 , HORVU4Hr1G018990.6 , HORVU2Hr1G028060.12 , HORVU2Hr1G028060.13 , HORVU2Hr1G028060.10 , HORVU2Hr1G028060.11 , HORVU2Hr1G028060.16 , HORVU2Hr1G028060.17 , HORVU2Hr1G028060.14 , HORVU2Hr1G028060.15 , HORVU2Hr1G028060.18 , HORVU2Hr1G028060.19 , HORVU2Hr1G028060.29 , HORVU2Hr1G028060.23 , HORVU2Hr1G028060.22 , HORVU2Hr1G028060.21 , HORVU2Hr1G028060.20 , HORVU2Hr1G028060.27 , HORVU2Hr1G028060.26 , HORVU2Hr1G028060.25 , HORVU2Hr1G028060.24
Wheat TraesCS4B02G094600 , TraesCS2A02G154400 , TraesCS2B02G179600 , TraesCS4A02G216300 , TraesCS2D02G159900 , TraesCS2D02G159900 , TraesCS4D02G091400 , TraesCS4D02G091400 , TraesCS4D02G091400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
2 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
3 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
4 Sobic.009G158100 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
5 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
6 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
7 Sobic.008G147200 tubulin, putative, expressed -
8 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
9 Sobic.007G126500 - K14808: DDX54, ATP-dependent RNA helicase DDX54/DBP10
10 Sobic.001G393900 FAD binding domain containing protein, expressed -
11 Sobic.006G131200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03018: RPC1, DNA-directed RNA polymerase III subunit RPC1
12 Sobic.005G137700 OsFBX409 - F-box domain containing protein, expressed -
13 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
14 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
15 Sobic.004G224600 expressed protein -
16 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
17 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
18 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
19 Sobic.003G416700 homeobox domain containing protein, expressed -
20 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein


Gene co-expression network
sample Sobic003G042400 Sobic003G042400 Sobic007G168300 Sobic007G168300 Sobic003G042400--Sobic007G168300 Sobic001G376900 Sobic001G376900 Sobic003G042400--Sobic001G376900 Sobic001G346900 Sobic001G346900 Sobic003G042400--Sobic001G346900 Sobic009G158100 Sobic009G158100 Sobic003G042400--Sobic009G158100 Sobic001G145400 Sobic001G145400 Sobic003G042400--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic003G042400--Sobic001G052400 Sobic008G147200 Sobic008G147200 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic007G126500 Sobic007G126500 Sobic003G042400--Sobic007G126500 Sobic007G168300--Sobic003G042400 Sobic005G200800 Sobic005G200800 Sobic007G168300--Sobic005G200800 Sobic010G001100 Sobic010G001100 Sobic007G168300--Sobic010G001100 Sobic002G154000 Sobic002G154000 Sobic007G168300--Sobic002G154000 Sobic009G126300 Sobic009G126300 Sobic007G168300--Sobic009G126300 Sobic007G183300 Sobic007G183300 Sobic007G168300--Sobic007G183300 Sobic001G453000 Sobic001G453000 Sobic007G168300--Sobic001G453000 Sobic007G168300--Sobic001G376900 Sobic005G200900 Sobic005G200900 Sobic007G168300--Sobic005G200900 Sobic001G376900--Sobic003G042400 Sobic001G453400 Sobic001G453400 Sobic001G376900--Sobic001G453400 Sobic001G376900--Sobic007G126500 Sobic006G086600 Sobic006G086600 Sobic001G376900--Sobic006G086600 Sobic001G376900--Sobic009G158100 Sobic001G376900--Sobic007G168300 Sobic004G224600 Sobic004G224600 Sobic001G376900--Sobic004G224600 Sobic001G376900--Sobic001G052400 Sobic001G393900 Sobic001G393900 Sobic001G376900--Sobic001G393900 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic001G346900--Sobic003G042400 Sobic001G346900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic003G095900 Sobic003G095900 Sobic009G158100--Sobic003G095900 Sobic009G158100--Sobic003G042400 Sobic001G089600 Sobic001G089600 Sobic009G158100--Sobic001G089600 Sobic006G267600 Sobic006G267600 Sobic009G158100--Sobic006G267600 Sobic002G275600 Sobic002G275600 Sobic009G158100--Sobic002G275600 Sobic009G158100--Sobic001G376900 Sobic004G320500 Sobic004G320500 Sobic009G158100--Sobic004G320500 Sobic004G260100 Sobic004G260100 Sobic009G158100--Sobic004G260100 Sobic010G275500 Sobic010G275500 Sobic009G158100--Sobic010G275500 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic001G052400--Sobic004G320500 Sobic010G003400 Sobic010G003400 Sobic001G052400--Sobic010G003400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic001G052400--Sobic003G042400 Sobic001G052400--Sobic004G340400 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic006G125900 Sobic006G125900 Sobic001G052400--Sobic006G125900 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic009G255600--Sobic010G186600 Sobic009G255600--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic009G255600--Sobic003G214600 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic002G029100 Sobic002G029100 Sobic009G255600--Sobic002G029100 Sobic009G255600--Sobic003G042400 Sobic009G255600--Sobic001G291800 Sobic003G360400 Sobic003G360400 Sobic009G255600--Sobic003G360400 Sobic007G126500--Sobic001G376900 Sobic007G126500--Sobic003G042400 Sobic006G013100 Sobic006G013100 Sobic007G126500--Sobic006G013100 Sobic007G126500--Sobic001G453000 Sobic007G126500--Sobic001G453400 Sobic007G126500--Sobic001G393900 Sobic007G126500--Sobic009G158100 Sobic007G126500--Sobic001G145400 Sobic007G126500--Sobic007G168300
Octagon: transcription factors


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