Gene annotation
Transcriptome id Sobic.002G052700.1
Synonym Sb02g004430
Functional annotation cyclophilin, putative, expressed
UniProt C5XB10
Pfam PF00160
Panther DB PTHR11071:SF297 PTHR11071
NCBI CDD KOG0880; Peptidyl-prolyl cis-trans isomerase KOG0879U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase KOG0865Cyclophilin type peptidyl-prolyl cis-trans isomerase
KEGG Orthology K09566; peptidyl-prolyl isomerase G (cyclophilin G)
Gene Ontology GO:0000413; protein peptidyl-prolyl isomerization GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0006457protein folding


Orthologs (automatic annotation)
TAIR AT3G63400 : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
RAP-DB (Rice) LOC_Os07g08190.1 : cyclophilin, putative, expressed
MaizeGDB (Corn) Zm00025a016084 , Zm00025a045173
Brachypodium KQK20597 , KQK20598
Barley HORVU2Hr1G056230.10 , HORVU2Hr1G056230.9 , HORVU2Hr1G056230.1 , HORVU2Hr1G056230.2 , HORVU2Hr1G056230.3 , HORVU2Hr1G056230.4 , HORVU2Hr1G056230.6
Wheat TraesCS2B02G260600 , TraesCS2A02G237700 , TraesCS2A02G237700 , TraesCS2D02G244700
Populus -


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cDNA sequences
Sobic.002G052700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
2 Sobic.004G357400 beta-catenin-like protein 1, putative, expressed K12864: beta-catenin-like protein 1
3 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
4 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.001G393900 FAD binding domain containing protein, expressed -
6 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
7 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
8 Sobic.003G379200 wound-responsive family protein, putative, expressed -
9 Sobic.008G147200 tubulin, putative, expressed -
10 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
11 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
12 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
13 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
14 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
15 Sobic.006G267600 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
16 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
17 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
18 Sobic.002G425500 ATPOT1, putative, expressed -
19 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
20 Sobic.004G332400 neurochondrin family protein, putative, expressed -


Gene co-expression network
sample Sobic002G052700 Sobic002G052700 Sobic001G251100 Sobic001G251100 Sobic002G052700--Sobic001G251100 Sobic004G357400 Sobic004G357400 Sobic002G052700--Sobic004G357400 Sobic003G042400 Sobic003G042400 Sobic002G052700--Sobic003G042400 Sobic004G321700 Sobic004G321700 Sobic002G052700--Sobic004G321700 Sobic001G393900 Sobic001G393900 Sobic002G052700--Sobic001G393900 Sobic001G003500 Sobic001G003500 Sobic002G052700--Sobic001G003500 Sobic001G052400 Sobic001G052400 Sobic002G052700--Sobic001G052400 Sobic003G379200 Sobic003G379200 Sobic002G052700--Sobic003G379200 Sobic008G147200 Sobic008G147200 Sobic002G052700--Sobic008G147200 Sobic003G104000 Sobic003G104000 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic003G293300 Sobic003G293300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic001G251100--Sobic003G379200 Sobic004G357400--Sobic002G052700 Sobic004G357400--Sobic001G251100 Sobic004G357400--Sobic001G003500 Sobic004G357400--Sobic003G104000 Sobic009G134900 Sobic009G134900 Sobic004G357400--Sobic009G134900 Sobic004G357400--Sobic003G293300 Sobic004G357400--Sobic002G256700 Sobic006G084000 Sobic006G084000 Sobic004G357400--Sobic006G084000 Sobic009G131900 Sobic009G131900 Sobic004G357400--Sobic009G131900 Sobic007G168300 Sobic007G168300 Sobic003G042400--Sobic007G168300 Sobic001G376900 Sobic001G376900 Sobic003G042400--Sobic001G376900 Sobic001G346900 Sobic001G346900 Sobic003G042400--Sobic001G346900 Sobic009G158100 Sobic009G158100 Sobic003G042400--Sobic009G158100 Sobic001G145400 Sobic001G145400 Sobic003G042400--Sobic001G145400 Sobic003G042400--Sobic001G052400 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic007G126500 Sobic007G126500 Sobic003G042400--Sobic007G126500 Sobic004G321700--Sobic008G147200 Sobic004G321700--Sobic001G393900 Sobic004G332400 Sobic004G332400 Sobic004G321700--Sobic004G332400 Sobic004G321700--Sobic001G346900 Sobic006G002800 Sobic006G002800 Sobic004G321700--Sobic006G002800 Sobic004G309900 Sobic004G309900 Sobic004G321700--Sobic004G309900 Sobic004G321700--Sobic001G003500 Sobic003G362900 Sobic003G362900 Sobic004G321700--Sobic003G362900 Sobic004G321700--Sobic002G052700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic001G393900--Sobic003G042400 Sobic001G003500--Sobic004G321700 Sobic001G003500--Sobic008G147200 Sobic001G003500--Sobic002G052700 Sobic001G291800 Sobic001G291800 Sobic001G003500--Sobic001G291800 Sobic005G220000 Sobic005G220000 Sobic001G003500--Sobic005G220000 Sobic010G007100 Sobic010G007100 Sobic001G003500--Sobic010G007100 Sobic001G003500--Sobic004G357400 Sobic004G095300 Sobic004G095300 Sobic001G003500--Sobic004G095300 Sobic006G125900 Sobic006G125900 Sobic001G003500--Sobic006G125900 Sobic004G320500 Sobic004G320500 Sobic001G052400--Sobic004G320500 Sobic010G003400 Sobic010G003400 Sobic001G052400--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic001G052400--Sobic003G042400 Sobic004G340400 Sobic004G340400 Sobic001G052400--Sobic004G340400 Sobic006G086600 Sobic006G086600 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic001G052400--Sobic006G125900 Sobic006G261400 Sobic006G261400 Sobic003G379200--Sobic006G261400 Sobic009G044800 Sobic009G044800 Sobic003G379200--Sobic009G044800 Sobic006G088200 Sobic006G088200 Sobic003G379200--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G379200--Sobic003G360400 Sobic008G083200 Sobic008G083200 Sobic003G379200--Sobic008G083200 Sobic010G000800 Sobic010G000800 Sobic003G379200--Sobic010G000800 Sobic001G354600 Sobic001G354600 Sobic003G379200--Sobic001G354600 Sobic003G363700 Sobic003G363700 Sobic003G379200--Sobic003G363700 Sobic006G174850 Sobic006G174850 Sobic003G379200--Sobic006G174850 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic008G147200--Sobic003G042400 Sobic008G147200--Sobic001G291800
Octagon: transcription factors


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