Gene annotation
Transcriptome id Sobic.006G267600.2,Sobic.006G267600.5,Sobic.006G267600.6
Synonym Sb06g032980
Functional annotation elongation factor Tu, putative, expressed
UniProt C5YAJ3 , A0A1B6PP35 , A0A1B6PP38
Pfam PF00009 PF03143 PF03143 PF00009
Panther DB PTHR23115:SF134 PTHR23115 PTHR23115 PTHR23115:SF134
NCBI CDD -
KEGG Orthology K14416; elongation factor 1 alpha-like protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G10630 : Translation elongation factor EF1A/initiation factor IF2gamma family protein
RAP-DB (Rice) LOC_Os04g58140.1 : elongation factor Tu, putative, expressed
MaizeGDB (Corn) Zm00025a009289
Brachypodium KQJ85300 , PNT62142
Barley HORVU2Hr1G119310.9 , HORVU2Hr1G119310.8 , HORVU2Hr1G119310.5 , HORVU2Hr1G119310.4 , HORVU2Hr1G119310.7 , HORVU2Hr1G119310.6 , HORVU2Hr1G119310.1 , HORVU2Hr1G119310.3 , HORVU2Hr1G119310.2 , HORVU2Hr1G119310.20 , HORVU2Hr1G119310.21 , HORVU2Hr1G119310.19 , HORVU2Hr1G119310.18 , HORVU2Hr1G119310.11 , HORVU2Hr1G119310.10 , HORVU2Hr1G119310.13 , HORVU2Hr1G119310.12 , HORVU2Hr1G119310.15 , HORVU2Hr1G119310.14 , HORVU2Hr1G119310.17 , HORVU2Hr1G119310.16
Wheat TraesCS2A02G592500 , TraesCS2A02G592500 , TraesCS2A02G592500 , TraesCS2A02G592500 , TraesCS2D02G562000 , TraesCS2D02G562000 , TraesCS2D02G562000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
2 Sobic.001G051700 expressed protein -
3 Sobic.001G393900 FAD binding domain containing protein, expressed -
4 Sobic.002G154000 EDM2, putative, expressed -
5 Sobic.007G063000 expressed protein -
6 Sobic.002G048700 BT1 family protein, putative, expressed -
7 Sobic.009G158100 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
8 Sobic.004G322400 WD40-like, putative, expressed -
9 Sobic.003G416700 homeobox domain containing protein, expressed -
10 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
11 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
12 Sobic.007G183900 ubiquitin family protein, putative, expressed -
13 Sobic.010G223100 PAP/25A associated domain containing protein, putative, expressed -
14 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
15 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
16 Sobic.010G275500 EF hand family protein, putative, expressed -
17 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
18 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
19 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
20 Sobic.002G399800 PWWP domain containing protein, expressed -


Gene co-expression network
sample Sobic006G267600 Sobic006G267600 Sobic006G261400 Sobic006G261400 Sobic006G267600--Sobic006G261400 Sobic001G051700 Sobic001G051700 Sobic006G267600--Sobic001G051700 Sobic001G393900 Sobic001G393900 Sobic006G267600--Sobic001G393900 Sobic002G154000 Sobic002G154000 Sobic006G267600--Sobic002G154000 Sobic007G063000 Sobic007G063000 Sobic006G267600--Sobic007G063000 Sobic002G048700 Sobic002G048700 Sobic006G267600--Sobic002G048700 Sobic009G158100 Sobic009G158100 Sobic006G267600--Sobic009G158100 Sobic004G322400 Sobic004G322400 Sobic006G267600--Sobic004G322400 Sobic003G416700 Sobic003G416700 Sobic006G267600--Sobic003G416700 Sobic003G379200 Sobic003G379200 Sobic006G261400--Sobic003G379200 Sobic006G127600 Sobic006G127600 Sobic006G261400--Sobic006G127600 Sobic006G261400--Sobic006G267600 Sobic003G104000 Sobic003G104000 Sobic006G261400--Sobic003G104000 Sobic010G000800 Sobic010G000800 Sobic006G261400--Sobic010G000800 Sobic006G261400--Sobic002G048700 Sobic006G261400--Sobic001G051700 Sobic004G131300 Sobic004G131300 Sobic006G261400--Sobic004G131300 Sobic003G296900 Sobic003G296900 Sobic006G261400--Sobic003G296900 Sobic001G051700--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G051700--Sobic002G145800 Sobic001G051700--Sobic006G267600 Sobic001G051700--Sobic002G154000 Sobic001G051700--Sobic006G261400 Sobic006G224800 Sobic006G224800 Sobic001G051700--Sobic006G224800 Sobic007G183300 Sobic007G183300 Sobic001G051700--Sobic007G183300 Sobic010G275500 Sobic010G275500 Sobic001G051700--Sobic010G275500 Sobic003G062300 Sobic003G062300 Sobic001G051700--Sobic003G062300 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400 Sobic003G360400 Sobic003G360400 Sobic002G154000--Sobic003G360400 Sobic002G154000--Sobic003G416700 Sobic010G112100 Sobic010G112100 Sobic002G154000--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic002G154000--Sobic001G063700 Sobic010G001100 Sobic010G001100 Sobic002G154000--Sobic010G001100 Sobic001G461400 Sobic001G461400 Sobic002G154000--Sobic001G461400 Sobic001G433800 Sobic001G433800 Sobic002G154000--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic002G154000--Sobic004G048800 Sobic002G154000--Sobic007G063000 Sobic007G063000--Sobic001G433800 Sobic003G196300 Sobic003G196300 Sobic007G063000--Sobic003G196300 Sobic007G063000--Sobic003G360400 Sobic009G109200 Sobic009G109200 Sobic007G063000--Sobic009G109200 Sobic009G165700 Sobic009G165700 Sobic007G063000--Sobic009G165700 Sobic007G063000--Sobic010G112100 Sobic003G166750 Sobic003G166750 Sobic007G063000--Sobic003G166750 Sobic004G242400 Sobic004G242400 Sobic007G063000--Sobic004G242400 Sobic009G256300 Sobic009G256300 Sobic007G063000--Sobic009G256300 Sobic002G048700--Sobic006G261400 Sobic002G048700--Sobic006G267600 Sobic002G048700--Sobic001G051700 Sobic002G048700--Sobic003G416700 Sobic004G040200 Sobic004G040200 Sobic002G048700--Sobic004G040200 Sobic002G425500 Sobic002G425500 Sobic002G048700--Sobic002G425500 Sobic001G111600 Sobic001G111600 Sobic002G048700--Sobic001G111600 Sobic007G183900 Sobic007G183900 Sobic002G048700--Sobic007G183900 Sobic008G002500 Sobic008G002500 Sobic002G048700--Sobic008G002500 Sobic003G095900 Sobic003G095900 Sobic009G158100--Sobic003G095900 Sobic009G158100--Sobic003G042400 Sobic009G158100--Sobic001G089600 Sobic009G158100--Sobic006G267600 Sobic002G275600 Sobic002G275600 Sobic009G158100--Sobic002G275600 Sobic001G376900 Sobic001G376900 Sobic009G158100--Sobic001G376900 Sobic004G320500 Sobic004G320500 Sobic009G158100--Sobic004G320500 Sobic004G260100 Sobic004G260100 Sobic009G158100--Sobic004G260100 Sobic009G158100--Sobic010G275500 Sobic002G401500 Sobic002G401500 Sobic004G322400--Sobic002G401500 Sobic002G042600 Sobic002G042600 Sobic004G322400--Sobic002G042600 Sobic009G131300 Sobic009G131300 Sobic004G322400--Sobic009G131300 Sobic010G223100 Sobic010G223100 Sobic004G322400--Sobic010G223100 Sobic008G124800 Sobic008G124800 Sobic004G322400--Sobic008G124800 Sobic002G179400 Sobic002G179400 Sobic004G322400--Sobic002G179400 Sobic010G059500 Sobic010G059500 Sobic004G322400--Sobic010G059500 Sobic001G065100 Sobic001G065100 Sobic004G322400--Sobic001G065100 Sobic004G322400--Sobic010G275500 Sobic003G416700--Sobic002G154000 Sobic002G264200 Sobic002G264200 Sobic003G416700--Sobic002G264200 Sobic003G416700--Sobic001G461400 Sobic003G416700--Sobic007G183900 Sobic003G416700--Sobic001G051700 Sobic003G416700--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic003G416700--Sobic009G119000 Sobic003G416700--Sobic001G063700 Sobic003G416700--Sobic010G275500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.