Gene annotation
Transcriptome id Sobic.009G158100.1
Synonym Sb09g022130
Functional annotation calcium-binding mitochondrial protein anon-60Da, putative, expressed
UniProt C5YYU3
Pfam PF07766
Panther DB PTHR14009:SF12 PTHR14009
NCBI CDD KOG1043; Ca2+-binding transmembrane protein LETM1/MRS7
KEGG Orthology K17800; LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G59820 : LETM1-like protein
RAP-DB (Rice) LOC_Os02g39550.1 : calcium-binding mitochondrial protein anon-60Da, putative, expressed
MaizeGDB (Corn) Zm00025a021226 , Zm00025a010812 , Zm00025a037228
Brachypodium KQK06415 , KQJ83373 , KQK00271 , KQK00272
Barley HORVU2Hr1G085780.30 , HORVU2Hr1G085780.31 , HORVU2Hr1G085780.8 , HORVU2Hr1G085780.9 , HORVU2Hr1G085780.1 , HORVU2Hr1G085780.2 , HORVU2Hr1G085780.3 , HORVU2Hr1G085780.4 , HORVU2Hr1G085780.5 , HORVU2Hr1G085780.6 , HORVU2Hr1G085780.7 , HORVU1Hr1G062470.2 , HORVU1Hr1G062470.3 , HORVU1Hr1G062470.1 , HORVU1Hr1G062470.6 , HORVU1Hr1G062470.7 , HORVU1Hr1G062470.4 , HORVU1Hr1G062470.5 , HORVU1Hr1G062470.8 , HORVU1Hr1G062470.9 , HORVU2Hr1G085780.12 , HORVU2Hr1G085780.13 , HORVU2Hr1G085780.10 , HORVU2Hr1G085780.11 , HORVU2Hr1G085780.16 , HORVU2Hr1G085780.17 , HORVU2Hr1G085780.14 , HORVU2Hr1G085780.15 , HORVU2Hr1G085780.18 , HORVU2Hr1G085780.19 , HORVU6Hr1G055750.6 , HORVU6Hr1G055750.7 , HORVU6Hr1G055750.4 , HORVU6Hr1G055750.2 , HORVU6Hr1G055750.3 , HORVU6Hr1G055750.1 , HORVU6Hr1G055750.8 , HORVU2Hr1G085780.25 , HORVU2Hr1G085780.29 , HORVU2Hr1G085780.28 , HORVU2Hr1G085780.23 , HORVU2Hr1G085780.22 , HORVU2Hr1G085780.21 , HORVU2Hr1G085780.20 , HORVU2Hr1G085780.27 , HORVU2Hr1G085780.26 , HORVU2Hr1G085780.24
Wheat TraesCS1A02G248400 , TraesCS1A02G248400 , TraesCS6B02G247500 , TraesCS7A02G329400 , TraesCS7A02G329400 , TraesCS1D02G247800 , TraesCS6D02G200200 , TraesCS6D02G201300 , TraesCS1B02G259000 , TraesCS6A02G218100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
2 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
3 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
4 Sobic.006G267600 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
5 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
6 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
7 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
8 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
9 Sobic.010G275500 EF hand family protein, putative, expressed -
10 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
11 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
12 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
13 Sobic.010G116600 FHA domain containing protein, putative, expressed -
14 Sobic.004G314000 expressed protein -
15 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
16 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
17 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
18 Sobic.002G397500 SAC3/GANP family protein, expressed -
19 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
20 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)


Gene co-expression network
sample Sobic009G158100 Sobic009G158100 Sobic003G095900 Sobic003G095900 Sobic009G158100--Sobic003G095900 Sobic003G042400 Sobic003G042400 Sobic009G158100--Sobic003G042400 Sobic001G089600 Sobic001G089600 Sobic009G158100--Sobic001G089600 Sobic006G267600 Sobic006G267600 Sobic009G158100--Sobic006G267600 Sobic002G275600 Sobic002G275600 Sobic009G158100--Sobic002G275600 Sobic001G376900 Sobic001G376900 Sobic009G158100--Sobic001G376900 Sobic004G320500 Sobic004G320500 Sobic009G158100--Sobic004G320500 Sobic004G260100 Sobic004G260100 Sobic009G158100--Sobic004G260100 Sobic010G275500 Sobic010G275500 Sobic009G158100--Sobic010G275500 Sobic004G242400 Sobic004G242400 Sobic003G095900--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic003G095900--Sobic001G433800 Sobic002G133300 Sobic002G133300 Sobic003G095900--Sobic002G133300 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic007G168300 Sobic007G168300 Sobic003G042400--Sobic007G168300 Sobic003G042400--Sobic001G376900 Sobic001G346900 Sobic001G346900 Sobic003G042400--Sobic001G346900 Sobic003G042400--Sobic009G158100 Sobic001G145400 Sobic001G145400 Sobic003G042400--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic003G042400--Sobic001G052400 Sobic008G147200 Sobic008G147200 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic007G126500 Sobic007G126500 Sobic003G042400--Sobic007G126500 Sobic001G089600--Sobic003G095900 Sobic006G086600 Sobic006G086600 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic006G261400 Sobic006G261400 Sobic006G267600--Sobic006G261400 Sobic001G051700 Sobic001G051700 Sobic006G267600--Sobic001G051700 Sobic001G393900 Sobic001G393900 Sobic006G267600--Sobic001G393900 Sobic002G154000 Sobic002G154000 Sobic006G267600--Sobic002G154000 Sobic007G063000 Sobic007G063000 Sobic006G267600--Sobic007G063000 Sobic002G048700 Sobic002G048700 Sobic006G267600--Sobic002G048700 Sobic006G267600--Sobic009G158100 Sobic006G267600--Sobic004G322400 Sobic003G416700 Sobic003G416700 Sobic006G267600--Sobic003G416700 Sobic005G160100 Sobic005G160100 Sobic002G275600--Sobic005G160100 Sobic009G247400 Sobic009G247400 Sobic002G275600--Sobic009G247400 Sobic008G014500 Sobic008G014500 Sobic002G275600--Sobic008G014500 Sobic001G363500 Sobic001G363500 Sobic002G275600--Sobic001G363500 Sobic001G219600 Sobic001G219600 Sobic002G275600--Sobic001G219600 Sobic001G441400 Sobic001G441400 Sobic002G275600--Sobic001G441400 Sobic002G275600--Sobic002G397500 Sobic003G006400 Sobic003G006400 Sobic002G275600--Sobic003G006400 Sobic010G209400 Sobic010G209400 Sobic002G275600--Sobic010G209400 Sobic001G376900--Sobic003G042400 Sobic001G453400 Sobic001G453400 Sobic001G376900--Sobic001G453400 Sobic001G376900--Sobic007G126500 Sobic001G376900--Sobic006G086600 Sobic001G376900--Sobic009G158100 Sobic001G376900--Sobic007G168300 Sobic004G224600 Sobic004G224600 Sobic001G376900--Sobic004G224600 Sobic001G376900--Sobic001G052400 Sobic001G376900--Sobic001G393900 Sobic004G320500--Sobic001G052400 Sobic004G320500--Sobic006G086600 Sobic004G340400 Sobic004G340400 Sobic004G320500--Sobic004G340400 Sobic002G256700 Sobic002G256700 Sobic004G320500--Sobic002G256700 Sobic004G320500--Sobic001G493700 Sobic004G320500--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic004G320500--Sobic010G102600 Sobic010G003400 Sobic010G003400 Sobic004G320500--Sobic010G003400 Sobic004G320500--Sobic009G255600 Sobic001G214600 Sobic001G214600 Sobic004G260100--Sobic001G214600 Sobic004G260100--Sobic009G084900 Sobic004G260100--Sobic002G397500 Sobic004G260100--Sobic001G089600 Sobic001G493200 Sobic001G493200 Sobic004G260100--Sobic001G493200 Sobic001G334700 Sobic001G334700 Sobic004G260100--Sobic001G334700 Sobic010G147833 Sobic010G147833 Sobic004G260100--Sobic010G147833 Sobic004G023100 Sobic004G023100 Sobic004G260100--Sobic004G023100 Sobic010G053600 Sobic010G053600 Sobic004G260100--Sobic010G053600 Sobic010G053800 Sobic010G053800 Sobic010G275500--Sobic010G053800 Sobic004G072100 Sobic004G072100 Sobic010G275500--Sobic004G072100 Sobic006G012500 Sobic006G012500 Sobic010G275500--Sobic006G012500 Sobic001G155000 Sobic001G155000 Sobic010G275500--Sobic001G155000 Sobic010G116600 Sobic010G116600 Sobic010G275500--Sobic010G116600 Sobic010G069100 Sobic010G069100 Sobic010G275500--Sobic010G069100 Sobic009G119000 Sobic009G119000 Sobic010G275500--Sobic009G119000 Sobic007G183900 Sobic007G183900 Sobic010G275500--Sobic007G183900 Sobic010G275500--Sobic002G397500
Octagon: transcription factors


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