Gene annotation
Transcriptome id Sobic.010G007100.1
Synonym emb1354, CDC48C, Sb10g000870
Functional annotation AAA family ATPase, putative, expressed
UniProt C5Z2P2
Pfam PF05496
Panther DB PTHR23077 PTHR23077:SF55
NCBI CDD -
KEGG Orthology K14571; RIX7, ribosome biogenesis ATPase
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT3G01610 : cell division cycle 48C
RAP-DB (Rice) LOC_Os06g01980.1 : AAA family ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a016592 , Zm00025a035016 , Zm00025a000018 , Zm00025a000019 , Zm00025a041174 , Zm00025a050290 , Zm00025a056865 , Zm00025a052572 , Zm00025a048709
Brachypodium KQK20020
Barley HORVU7Hr1G002880.6 , HORVU7Hr1G002880.5 , HORVU7Hr1G002880.4 , HORVU7Hr1G002880.3 , HORVU7Hr1G002880.2 , HORVU7Hr1G002880.1
Wheat TraesCS4A02G463300 , TraesCS7D02G023600 , TraesCS3A02G450800 , TraesCS5D02G081900 , TraesCS5D02G081900 , TraesCS5D02G081900 , TraesCS3B02G487900 , TraesCS3D02G443600 , TraesCS7A02G025800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
2 Sobic.008G147200 tubulin, putative, expressed -
3 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
4 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
5 Sobic.005G137700 OsFBX409 - F-box domain containing protein, expressed -
6 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
7 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
8 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
9 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
10 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
11 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -
12 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
13 Sobic.009G158100 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
14 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
15 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
16 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
17 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
18 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
19 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
20 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -


Gene co-expression network
sample Sobic010G007100 Sobic010G007100 Sobic001G145400 Sobic001G145400 Sobic010G007100--Sobic001G145400 Sobic008G147200 Sobic008G147200 Sobic010G007100--Sobic008G147200 Sobic004G340400 Sobic004G340400 Sobic010G007100--Sobic004G340400 Sobic006G086600 Sobic006G086600 Sobic010G007100--Sobic006G086600 Sobic005G137700 Sobic005G137700 Sobic010G007100--Sobic005G137700 Sobic006G077200 Sobic006G077200 Sobic010G007100--Sobic006G077200 Sobic002G235200 Sobic002G235200 Sobic010G007100--Sobic002G235200 Sobic006G002800 Sobic006G002800 Sobic010G007100--Sobic006G002800 Sobic003G042400 Sobic003G042400 Sobic010G007100--Sobic003G042400 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic008G147200--Sobic010G007100 Sobic001G346900 Sobic001G346900 Sobic008G147200--Sobic001G346900 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic004G340400--Sobic001G145400 Sobic004G340400--Sobic001G291800 Sobic004G320500 Sobic004G320500 Sobic004G340400--Sobic004G320500 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500 Sobic010G003400 Sobic010G003400 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic001G089600 Sobic001G089600 Sobic006G086600--Sobic001G089600 Sobic009G101200 Sobic009G101200 Sobic006G086600--Sobic009G101200 Sobic001G453400 Sobic001G453400 Sobic006G086600--Sobic001G453400 Sobic006G086600--Sobic004G320500 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic006G086600--Sobic010G007100 Sobic005G137700--Sobic008G147200 Sobic005G137700--Sobic010G007100 Sobic005G137700--Sobic003G042400 Sobic006G226300 Sobic006G226300 Sobic005G137700--Sobic006G226300 Sobic009G143800 Sobic009G143800 Sobic005G137700--Sobic009G143800 Sobic008G014500 Sobic008G014500 Sobic005G137700--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic005G137700--Sobic010G118000 Sobic005G137700--Sobic007G220300 Sobic008G131000 Sobic008G131000 Sobic005G137700--Sobic008G131000 Sobic006G077200--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic006G077200--Sobic010G185400 Sobic006G077200--Sobic010G059500 Sobic006G077200--Sobic001G145400 Sobic001G493200 Sobic001G493200 Sobic006G077200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic006G077200--Sobic003G249600 Sobic008G082500 Sobic008G082500 Sobic006G077200--Sobic008G082500 Sobic003G189600 Sobic003G189600 Sobic006G077200--Sobic003G189600 Sobic004G096400 Sobic004G096400 Sobic006G077200--Sobic004G096400 Sobic002G235200--Sobic006G086600 Sobic002G235200--Sobic001G089600 Sobic002G235200--Sobic001G145400 Sobic002G235200--Sobic010G059500 Sobic003G146600 Sobic003G146600 Sobic002G235200--Sobic003G146600 Sobic006G166200 Sobic006G166200 Sobic002G235200--Sobic006G166200 Sobic003G036400 Sobic003G036400 Sobic002G235200--Sobic003G036400 Sobic002G235200--Sobic004G320500 Sobic004G224600 Sobic004G224600 Sobic002G235200--Sobic004G224600 Sobic003G308500 Sobic003G308500 Sobic006G002800--Sobic003G308500 Sobic006G002800--Sobic004G224600 Sobic002G150700 Sobic002G150700 Sobic006G002800--Sobic002G150700 Sobic006G002800--Sobic001G145400 Sobic006G002800--Sobic003G146600 Sobic006G002800--Sobic010G007100 Sobic006G002800--Sobic004G321700 Sobic009G234700 Sobic009G234700 Sobic006G002800--Sobic009G234700 Sobic006G002800--Sobic008G147200 Sobic007G168300 Sobic007G168300 Sobic003G042400--Sobic007G168300 Sobic001G376900 Sobic001G376900 Sobic003G042400--Sobic001G376900 Sobic003G042400--Sobic001G346900 Sobic009G158100 Sobic009G158100 Sobic003G042400--Sobic009G158100 Sobic003G042400--Sobic001G145400 Sobic003G042400--Sobic001G052400 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic007G126500 Sobic007G126500 Sobic003G042400--Sobic007G126500
Octagon: transcription factors


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