Gene annotation
Transcriptome id Sobic.007G039400.1,Sobic.007G039400.2
Synonym Sb07g003350
Functional annotation tRNA synthetase, putative, expressed
UniProt A0A1B6PFF5 , A0A1B6PFG4
Pfam PF00579
Panther DB PTHR11946 PTHR11946:SF53
NCBI CDD KOG2144; Tyrosyl-tRNA synthetase, cytoplasmic
KEGG Orthology K01866; YARS, tyrosyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT2G33840 : Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
RAP-DB (Rice) LOC_Os08g23110.1,LOC_Os08g05490.1 : tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a030134 , Zm00025a055218
Brachypodium -
Barley HORVU0Hr1G021230.4 , HORVU0Hr1G021230.5 , HORVU0Hr1G021230.6 , HORVU0Hr1G021230.1 , HORVU0Hr1G021230.2 , HORVU0Hr1G021230.3
Wheat TraesCS7A02G304700 , TraesCS7A02G304700 , TraesCS7B02G205000 , TraesCS7B02G205000 , TraesCS7D02G300200 , TraesCS6B02G462900
Populus -


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cDNA sequences
Sobic.007G039400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
2 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
3 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
4 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
5 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
6 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
7 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
8 Sobic.010G176500 expressed protein -
9 Sobic.004G033600 expressed protein -
10 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
11 Sobic.001G515100 ATP binding protein, putative, expressed K06883: uncharacterized protein
12 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
14 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
16 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
17 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
18 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
19 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
20 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1


Gene co-expression network
sample Sobic007G039400 Sobic007G039400 Sobic001G291800 Sobic001G291800 Sobic007G039400--Sobic001G291800 Sobic009G138700 Sobic009G138700 Sobic007G039400--Sobic009G138700 Sobic001G259000 Sobic001G259000 Sobic007G039400--Sobic001G259000 Sobic001G145400 Sobic001G145400 Sobic007G039400--Sobic001G145400 Sobic004G340400 Sobic004G340400 Sobic007G039400--Sobic004G340400 Sobic010G007100 Sobic010G007100 Sobic007G039400--Sobic010G007100 Sobic004G353000 Sobic004G353000 Sobic007G039400--Sobic004G353000 Sobic010G176500 Sobic010G176500 Sobic007G039400--Sobic010G176500 Sobic004G033600 Sobic004G033600 Sobic007G039400--Sobic004G033600 Sobic001G291800--Sobic004G340400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic001G291800--Sobic004G353000 Sobic010G186600 Sobic010G186600 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic001G291800--Sobic008G147200 Sobic001G291800--Sobic007G039400 Sobic001G168900 Sobic001G168900 Sobic001G291800--Sobic001G168900 Sobic009G138700--Sobic007G039400 Sobic008G160000 Sobic008G160000 Sobic009G138700--Sobic008G160000 Sobic009G138700--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic009G138700--Sobic003G382500 Sobic002G406600 Sobic002G406600 Sobic009G138700--Sobic002G406600 Sobic003G178900 Sobic003G178900 Sobic009G138700--Sobic003G178900 Sobic006G235700 Sobic006G235700 Sobic009G138700--Sobic006G235700 Sobic006G135900 Sobic006G135900 Sobic009G138700--Sobic006G135900 Sobic009G143800 Sobic009G143800 Sobic009G138700--Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic004G156800 Sobic004G156800 Sobic001G259000--Sobic004G156800 Sobic006G270600 Sobic006G270600 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G259000--Sobic001G145400 Sobic001G259000--Sobic008G160000 Sobic001G259000--Sobic007G039400 Sobic001G259000--Sobic004G340400 Sobic001G259000--Sobic009G138700 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic004G340400--Sobic001G145400 Sobic004G340400--Sobic001G291800 Sobic004G320500 Sobic004G320500 Sobic004G340400--Sobic004G320500 Sobic004G340400--Sobic010G007100 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500 Sobic010G007100--Sobic001G145400 Sobic010G007100--Sobic008G147200 Sobic010G007100--Sobic004G340400 Sobic010G007100--Sobic006G086600 Sobic005G137700 Sobic005G137700 Sobic010G007100--Sobic005G137700 Sobic010G007100--Sobic006G077200 Sobic002G235200 Sobic002G235200 Sobic010G007100--Sobic002G235200 Sobic006G002800 Sobic006G002800 Sobic010G007100--Sobic006G002800 Sobic003G042400 Sobic003G042400 Sobic010G007100--Sobic003G042400 Sobic006G200700 Sobic006G200700 Sobic004G353000--Sobic006G200700 Sobic004G353000--Sobic009G143800 Sobic010G116600 Sobic010G116600 Sobic004G353000--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic004G353000--Sobic007G183900 Sobic002G371300 Sobic002G371300 Sobic004G353000--Sobic002G371300 Sobic002G371700 Sobic002G371700 Sobic004G353000--Sobic002G371700 Sobic009G044800 Sobic009G044800 Sobic004G353000--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic004G353000--Sobic001G473600 Sobic004G353000--Sobic001G291800 Sobic001G218800 Sobic001G218800 Sobic010G176500--Sobic001G218800 Sobic010G176500--Sobic007G039400 Sobic010G176500--Sobic001G291800 Sobic002G092300 Sobic002G092300 Sobic010G176500--Sobic002G092300 Sobic002G256200 Sobic002G256200 Sobic010G176500--Sobic002G256200 Sobic008G103300 Sobic008G103300 Sobic010G176500--Sobic008G103300 Sobic001G482900 Sobic001G482900 Sobic010G176500--Sobic001G482900 Sobic003G099300 Sobic003G099300 Sobic010G176500--Sobic003G099300 Sobic006G233300 Sobic006G233300 Sobic010G176500--Sobic006G233300 Sobic004G033600--Sobic007G039400 Sobic001G493200 Sobic001G493200 Sobic004G033600--Sobic001G493200 Sobic001G081000 Sobic001G081000 Sobic004G033600--Sobic001G081000 Sobic006G199200 Sobic006G199200 Sobic004G033600--Sobic006G199200 Sobic001G008200 Sobic001G008200 Sobic004G033600--Sobic001G008200 Sobic002G425700 Sobic002G425700 Sobic004G033600--Sobic002G425700 Sobic009G056200 Sobic009G056200 Sobic004G033600--Sobic009G056200 Sobic010G079900 Sobic010G079900 Sobic004G033600--Sobic010G079900 Sobic001G000200 Sobic001G000200 Sobic004G033600--Sobic001G000200
Octagon: transcription factors


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