Gene annotation
Transcriptome id Sobic.001G145400.1
Synonym Sb01g012680
Functional annotation threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed
UniProt C5WQD6
Pfam PF07973 PF02824 PF03129 PF00587
Panther DB PTHR11451 PTHR11451:SF5
NCBI CDD -
KEGG Orthology K01868; TARS, threonyl-tRNA synthetase
Gene Ontology GO:0016876; aminoacyl-tRNA ligase activity GO:0005524ATP binding GO:0006418tRNA aminoacylation for protein translation GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT5G26830 : Threonyl-tRNA synthetase
RAP-DB (Rice) LOC_Os08g19850.1 : threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a017180 , Zm00025a006565
Brachypodium PNT67059 , PNT67060 , KQJ95965 , KQJ95964
Barley HORVU1Hr1G057910.9 , HORVU1Hr1G057910.8 , HORVU1Hr1G057910.4 , HORVU1Hr1G057910.7 , HORVU1Hr1G057910.6 , HORVU3Hr1G012410.8 , HORVU3Hr1G012410.5 , HORVU3Hr1G012410.4 , HORVU3Hr1G012410.7 , HORVU3Hr1G012410.6 , HORVU3Hr1G012410.1 , HORVU3Hr1G012410.3 , HORVU3Hr1G012410.2 , HORVU1Hr1G057910.11 , HORVU1Hr1G057910.10 , HORVU1Hr1G057910.13 , HORVU1Hr1G057910.12 , HORVU3Hr1G012410.9 , HORVU1Hr1G057910.14
Wheat TraesCS1D02G236900 , TraesCS3D02G066900 , TraesCS1A02G235200 , TraesCS3B02G080400 , TraesCS1B02G248400 , TraesCS3A02G067300
Populus -


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cDNA sequences
Sobic.001G145400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
2 Sobic.001G035200 ThiF family domain containing protein, putative, expressed K04532: NAE1, amyloid beta precursor protein binding protein 1
3 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
4 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
5 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
6 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
7 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
8 Sobic.009G084900 expressed protein -
9 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
10 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
11 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
12 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
13 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
14 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
15 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
16 Sobic.001G393700 expressed protein -
17 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
18 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
19 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
20 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1


Gene co-expression network
sample Sobic001G145400 Sobic001G145400 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic010G003400 Sobic010G003400 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic001G089600 Sobic001G089600 Sobic006G086600--Sobic001G089600 Sobic009G101200 Sobic009G101200 Sobic006G086600--Sobic009G101200 Sobic001G453400 Sobic001G453400 Sobic006G086600--Sobic001G453400 Sobic004G320500 Sobic004G320500 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic006G086600--Sobic010G007100 Sobic001G035200--Sobic010G059500 Sobic001G035200--Sobic001G145400 Sobic010G185400 Sobic010G185400 Sobic001G035200--Sobic010G185400 Sobic001G035200--Sobic006G077200 Sobic010G034100 Sobic010G034100 Sobic001G035200--Sobic010G034100 Sobic001G035200--Sobic009G084900 Sobic001G155400 Sobic001G155400 Sobic001G035200--Sobic001G155400 Sobic002G371700 Sobic002G371700 Sobic001G035200--Sobic002G371700 Sobic001G087600 Sobic001G087600 Sobic001G035200--Sobic001G087600 Sobic010G059500--Sobic009G084900 Sobic009G131300 Sobic009G131300 Sobic010G059500--Sobic009G131300 Sobic010G059500--Sobic001G035200 Sobic004G096400 Sobic004G096400 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic010G059500--Sobic001G145400 Sobic010G059500--Sobic010G034100 Sobic010G059500--Sobic006G077200 Sobic001G493200 Sobic001G493200 Sobic010G059500--Sobic001G493200 Sobic006G077200--Sobic009G084900 Sobic006G077200--Sobic010G185400 Sobic006G077200--Sobic010G059500 Sobic006G077200--Sobic001G145400 Sobic006G077200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic006G077200--Sobic003G249600 Sobic008G082500 Sobic008G082500 Sobic006G077200--Sobic008G082500 Sobic003G189600 Sobic003G189600 Sobic006G077200--Sobic003G189600 Sobic006G077200--Sobic004G096400 Sobic003G405500--Sobic001G145400 Sobic008G124800 Sobic008G124800 Sobic003G405500--Sobic008G124800 Sobic002G430300 Sobic002G430300 Sobic003G405500--Sobic002G430300 Sobic003G405500--Sobic009G084900 Sobic006G166200 Sobic006G166200 Sobic003G405500--Sobic006G166200 Sobic004G141800 Sobic004G141800 Sobic003G405500--Sobic004G141800 Sobic003G405500--Sobic006G077200 Sobic003G405500--Sobic010G059500 Sobic003G314700 Sobic003G314700 Sobic003G405500--Sobic003G314700 Sobic010G007100--Sobic001G145400 Sobic008G147200 Sobic008G147200 Sobic010G007100--Sobic008G147200 Sobic010G007100--Sobic004G340400 Sobic010G007100--Sobic006G086600 Sobic005G137700 Sobic005G137700 Sobic010G007100--Sobic005G137700 Sobic010G007100--Sobic006G077200 Sobic010G007100--Sobic002G235200 Sobic006G002800 Sobic006G002800 Sobic010G007100--Sobic006G002800 Sobic003G042400 Sobic003G042400 Sobic010G007100--Sobic003G042400 Sobic004G340400--Sobic001G145400 Sobic001G291800 Sobic001G291800 Sobic004G340400--Sobic001G291800 Sobic004G340400--Sobic004G320500 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500 Sobic009G084900--Sobic010G059500 Sobic003G072200 Sobic003G072200 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic009G084900--Sobic006G077200 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100 Sobic004G085000--Sobic001G145400 Sobic010G114900 Sobic010G114900 Sobic004G085000--Sobic010G114900 Sobic006G185200 Sobic006G185200 Sobic004G085000--Sobic006G185200 Sobic003G199300 Sobic003G199300 Sobic004G085000--Sobic003G199300 Sobic005G010900 Sobic005G010900 Sobic004G085000--Sobic005G010900 Sobic001G219900 Sobic001G219900 Sobic004G085000--Sobic001G219900 Sobic004G085000--Sobic002G430300 Sobic004G085000--Sobic009G101200 Sobic004G085000--Sobic006G086600
Octagon: transcription factors


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