Gene annotation
Transcriptome id Sobic.001G291800.1
Synonym Sb01g028520, TIF3B1, ATTIF3B1, EIF3B, EIF3B-1, ATEIF3B-1
Functional annotation eukaryotic translation initiation factor 3 subunit B, putative, expressed
UniProt C5WRE1
Pfam PF00076 PF08662
Panther DB PTHR14068 PTHR14068:SF0
NCBI CDD -
KEGG Orthology K03253; translation initiation factor 3 subunit B
Gene Ontology GO:0003676; nucleic acid binding GO:0006413translational initiation GO:0005852eukaryotic translation initiation factor 3 complex GO:0003743translation initiation factor activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G27640 : translation initiation factor 3B1
RAP-DB (Rice) LOC_Os10g41960.1 : eukaryotic translation initiation factor 3 subunit B, putative, expressed
MaizeGDB (Corn) Zm00025a003447 , Zm00025a051862
Brachypodium KQJ91877
Barley HORVU5Hr1G106440.4 , HORVU5Hr1G106440.2 , HORVU5Hr1G106440.1 , HORVU4Hr1G014100.9 , HORVU4Hr1G014100.8 , HORVU4Hr1G014100.6 , HORVU4Hr1G014100.7 , HORVU4Hr1G014100.4 , HORVU4Hr1G014100.5 , HORVU4Hr1G014100.2 , HORVU4Hr1G014100.3
Wheat TraesCS5A02G442500 , TraesCS5B02G446600 , TraesCS5D02G449900 , TraesCS5D02G449900
Populus -


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cDNA sequences
Sobic.001G291800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
2 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
3 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
4 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
5 Sobic.010G186600 expressed protein -
6 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
7 Sobic.008G147200 tubulin, putative, expressed -
8 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
9 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
10 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
11 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
12 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
13 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
14 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
15 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
16 Sobic.007G187600 pentatricopeptide, putative, expressed -
17 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
18 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
19 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
20 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1


Gene co-expression network
sample Sobic001G291800 Sobic001G291800 Sobic004G340400 Sobic004G340400 Sobic001G291800--Sobic004G340400 Sobic001G145400 Sobic001G145400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic010G186600 Sobic010G186600 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G168900 Sobic001G168900 Sobic001G291800--Sobic001G168900 Sobic004G340400--Sobic001G145400 Sobic004G340400--Sobic001G291800 Sobic004G320500 Sobic004G320500 Sobic004G340400--Sobic004G320500 Sobic010G007100 Sobic010G007100 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic005G115500--Sobic001G291800 Sobic005G115500--Sobic001G145400 Sobic001G248100 Sobic001G248100 Sobic005G115500--Sobic001G248100 Sobic002G145800 Sobic002G145800 Sobic005G115500--Sobic002G145800 Sobic003G099300 Sobic003G099300 Sobic005G115500--Sobic003G099300 Sobic007G183300 Sobic007G183300 Sobic005G115500--Sobic007G183300 Sobic005G110499 Sobic005G110499 Sobic005G115500--Sobic005G110499 Sobic002G430300 Sobic002G430300 Sobic005G115500--Sobic002G430300 Sobic001G051700 Sobic001G051700 Sobic005G115500--Sobic001G051700 Sobic006G200700 Sobic006G200700 Sobic004G353000--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic004G353000--Sobic009G143800 Sobic010G116600 Sobic010G116600 Sobic004G353000--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic004G353000--Sobic007G183900 Sobic002G371300 Sobic002G371300 Sobic004G353000--Sobic002G371300 Sobic002G371700 Sobic002G371700 Sobic004G353000--Sobic002G371700 Sobic009G044800 Sobic009G044800 Sobic004G353000--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic004G353000--Sobic001G473600 Sobic004G353000--Sobic001G291800 Sobic010G186600--Sobic009G255600 Sobic010G186600--Sobic008G147200 Sobic010G186600--Sobic002G145800 Sobic010G186600--Sobic001G291800 Sobic002G005000 Sobic002G005000 Sobic010G186600--Sobic002G005000 Sobic001G023800 Sobic001G023800 Sobic010G186600--Sobic001G023800 Sobic010G266500 Sobic010G266500 Sobic010G186600--Sobic010G266500 Sobic010G186600--Sobic001G052400 Sobic003G409200 Sobic003G409200 Sobic010G186600--Sobic003G409200 Sobic009G255600--Sobic010G186600 Sobic003G416700 Sobic003G416700 Sobic009G255600--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic009G255600--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic002G029100 Sobic002G029100 Sobic009G255600--Sobic002G029100 Sobic003G042400 Sobic003G042400 Sobic009G255600--Sobic003G042400 Sobic009G255600--Sobic001G291800 Sobic003G360400 Sobic003G360400 Sobic009G255600--Sobic003G360400 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic008G147200--Sobic010G186600 Sobic008G147200--Sobic002G145800 Sobic008G147200--Sobic010G007100 Sobic001G346900 Sobic001G346900 Sobic008G147200--Sobic001G346900 Sobic008G147200--Sobic003G042400 Sobic008G147200--Sobic001G291800 Sobic007G039400--Sobic001G291800 Sobic009G138700 Sobic009G138700 Sobic007G039400--Sobic009G138700 Sobic001G259000 Sobic001G259000 Sobic007G039400--Sobic001G259000 Sobic007G039400--Sobic001G145400 Sobic007G039400--Sobic004G340400 Sobic007G039400--Sobic010G007100 Sobic007G039400--Sobic004G353000 Sobic010G176500 Sobic010G176500 Sobic007G039400--Sobic010G176500 Sobic004G033600 Sobic004G033600 Sobic007G039400--Sobic004G033600 Sobic007G187600 Sobic007G187600 Sobic001G168900--Sobic007G187600 Sobic004G307500 Sobic004G307500 Sobic001G168900--Sobic004G307500 Sobic002G077900 Sobic002G077900 Sobic001G168900--Sobic002G077900 Sobic001G168900--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic001G168900--Sobic009G258400 Sobic001G042200 Sobic001G042200 Sobic001G168900--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic001G168900--Sobic006G049100 Sobic004G346100 Sobic004G346100 Sobic001G168900--Sobic004G346100 Sobic003G132000 Sobic003G132000 Sobic001G168900--Sobic003G132000
Octagon: transcription factors


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