Gene annotation
Transcriptome id Sobic.002G005000.1
Synonym Sb02g000660
Functional annotation expressed protein
UniProt C5X762
Pfam PF08640
Panther DB PTHR23271
NCBI CDD KOG2396; HAT (Half-A-TPR) repeat-containing protein
KEGG Orthology K14557; U3 small nucleolar RNA-associated protein 6
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G28200 : -
RAP-DB (Rice) LOC_Os02g01350.1 : expressed protein
MaizeGDB (Corn) Zm00025a016260
Brachypodium KQK21213
Barley HORVU2Hr1G064130.1
Wheat TraesCS2D02G263800 , TraesCS2B02G282300 , TraesCS2A02G259600
Populus -


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cDNA sequences
Sobic.002G005000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
2 Sobic.010G186600 expressed protein -
3 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
4 Sobic.001G023800 expressed protein -
5 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
6 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
7 Sobic.008G147200 tubulin, putative, expressed -
8 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
9 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
10 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
11 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
12 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
13 Sobic.007G187600 pentatricopeptide, putative, expressed -
14 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
15 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
16 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
17 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
18 Sobic.008G164600 expressed protein -
19 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
20 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase


Gene co-expression network
sample Sobic002G005000 Sobic002G005000 Sobic001G373000 Sobic001G373000 Sobic002G005000--Sobic001G373000 Sobic010G186600 Sobic010G186600 Sobic002G005000--Sobic010G186600 Sobic001G291800 Sobic001G291800 Sobic002G005000--Sobic001G291800 Sobic001G023800 Sobic001G023800 Sobic002G005000--Sobic001G023800 Sobic001G052400 Sobic001G052400 Sobic002G005000--Sobic001G052400 Sobic004G307500 Sobic004G307500 Sobic002G005000--Sobic004G307500 Sobic008G147200 Sobic008G147200 Sobic002G005000--Sobic008G147200 Sobic004G340400 Sobic004G340400 Sobic002G005000--Sobic004G340400 Sobic001G013300 Sobic001G013300 Sobic002G005000--Sobic001G013300 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic009G255600 Sobic009G255600 Sobic010G186600--Sobic009G255600 Sobic010G186600--Sobic008G147200 Sobic002G145800 Sobic002G145800 Sobic010G186600--Sobic002G145800 Sobic010G186600--Sobic001G291800 Sobic010G186600--Sobic002G005000 Sobic010G186600--Sobic001G023800 Sobic010G266500 Sobic010G266500 Sobic010G186600--Sobic010G266500 Sobic010G186600--Sobic001G052400 Sobic003G409200 Sobic003G409200 Sobic010G186600--Sobic003G409200 Sobic001G291800--Sobic004G340400 Sobic001G145400 Sobic001G145400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic001G291800--Sobic010G186600 Sobic001G291800--Sobic009G255600 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G168900 Sobic001G168900 Sobic001G291800--Sobic001G168900 Sobic001G023800--Sobic010G266500 Sobic007G187600 Sobic007G187600 Sobic001G023800--Sobic007G187600 Sobic001G023800--Sobic010G186600 Sobic001G023800--Sobic002G005000 Sobic001G023800--Sobic001G373000 Sobic003G427100 Sobic003G427100 Sobic001G023800--Sobic003G427100 Sobic001G023800--Sobic001G013300 Sobic008G164600 Sobic008G164600 Sobic001G023800--Sobic008G164600 Sobic001G023800--Sobic001G291800 Sobic004G320500 Sobic004G320500 Sobic001G052400--Sobic004G320500 Sobic010G003400 Sobic010G003400 Sobic001G052400--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic003G042400 Sobic003G042400 Sobic001G052400--Sobic003G042400 Sobic001G052400--Sobic004G340400 Sobic006G086600 Sobic006G086600 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic006G125900 Sobic006G125900 Sobic001G052400--Sobic006G125900 Sobic004G307500--Sobic001G168900 Sobic001G524400 Sobic001G524400 Sobic004G307500--Sobic001G524400 Sobic002G077900 Sobic002G077900 Sobic004G307500--Sobic002G077900 Sobic004G307500--Sobic002G005000 Sobic009G258400 Sobic009G258400 Sobic004G307500--Sobic009G258400 Sobic004G307500--Sobic001G291800 Sobic007G143500 Sobic007G143500 Sobic004G307500--Sobic007G143500 Sobic001G007800 Sobic001G007800 Sobic004G307500--Sobic001G007800 Sobic001G527300 Sobic001G527300 Sobic004G307500--Sobic001G527300 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic008G147200--Sobic010G186600 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic001G346900 Sobic001G346900 Sobic008G147200--Sobic001G346900 Sobic008G147200--Sobic003G042400 Sobic008G147200--Sobic001G291800 Sobic004G340400--Sobic001G145400 Sobic004G340400--Sobic001G291800 Sobic004G340400--Sobic004G320500 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic001G013300--Sobic008G147200 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic001G013300--Sobic003G409200 Sobic001G013300--Sobic007G187600 Sobic001G013300--Sobic001G023800
Octagon: transcription factors


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