Gene annotation
Transcriptome id Sobic.001G013300.1
Synonym Sb01g001310
Functional annotation SWIM zinc finger family protein, putative, expressed
UniProt C5WSX4
Pfam -
Panther DB PTHR33977 PTHR33977:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G60560 : SWIM zinc finger family protein
RAP-DB (Rice) LOC_Os09g13880.1 : SWIM zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a016336
Brachypodium KQJ89808 , KQJ89807
Barley HORVU5Hr1G055090.18 , HORVU5Hr1G055090.19 , HORVU5Hr1G055090.14 , HORVU5Hr1G055090.15 , HORVU5Hr1G055090.16 , HORVU5Hr1G055090.17 , HORVU5Hr1G055090.10 , HORVU5Hr1G055090.11 , HORVU5Hr1G055090.12 , HORVU5Hr1G055090.13 , HORVU5Hr1G055090.21 , HORVU5Hr1G055090.20 , HORVU5Hr1G055090.23 , HORVU5Hr1G055090.22 , HORVU5Hr1G055090.25 , HORVU5Hr1G055090.24 , HORVU5Hr1G055090.27 , HORVU5Hr1G055090.26 , HORVU5Hr1G055090.6 , HORVU5Hr1G055090.7 , HORVU5Hr1G055090.4 , HORVU5Hr1G055090.5 , HORVU5Hr1G055090.2 , HORVU5Hr1G055090.3 , HORVU5Hr1G055090.1 , HORVU5Hr1G055090.8 , HORVU5Hr1G055090.9
Wheat TraesCS5D02G184900 , TraesCS5D02G184900 , TraesCS5A02G180400 , TraesCS5A02G180400 , TraesCS5A02G180400 , TraesCS5B02G178300 , TraesCS5B02G178300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
2 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
3 Sobic.008G147200 tubulin, putative, expressed -
4 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
5 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.010G215900 type II intron maturase protein, putative, expressed -
7 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
8 Sobic.007G187600 pentatricopeptide, putative, expressed -
9 Sobic.001G023800 expressed protein -
10 Sobic.003G214700 transcriptional corepressor LEUNIG, putative, expressed -
11 Sobic.010G186600 expressed protein -
12 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
13 Sobic.005G046900 expressed protein K08331: autophagy-related protein 13
14 Sobic.003G052800 RST1, putative, expressed -
15 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
16 Sobic.006G245900 FAR1 family protein, expressed -
17 Sobic.002G177500 expressed protein -
18 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
19 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
20 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4


Gene co-expression network
sample Sobic001G013300 Sobic001G013300 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G373000 Sobic001G373000 Sobic001G013300--Sobic001G373000 Sobic008G147200 Sobic008G147200 Sobic001G013300--Sobic008G147200 Sobic001G346900 Sobic001G346900 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic001G013300--Sobic001G023800 Sobic004G086200 Sobic004G086200 Sobic004G285000--Sobic004G086200 Sobic004G111000 Sobic004G111000 Sobic004G285000--Sobic004G111000 Sobic004G285000--Sobic001G346900 Sobic003G427100 Sobic003G427100 Sobic004G285000--Sobic003G427100 Sobic009G151200 Sobic009G151200 Sobic004G285000--Sobic009G151200 Sobic004G285000--Sobic010G215900 Sobic004G285000--Sobic003G409200 Sobic007G044100 Sobic007G044100 Sobic004G285000--Sobic007G044100 Sobic004G285000--Sobic001G013300 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic003G042400 Sobic003G042400 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic001G346900--Sobic004G086200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic001G346900--Sobic003G042400 Sobic001G346900--Sobic008G147200 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic004G031300 Sobic004G031300 Sobic001G004100--Sobic004G031300 Sobic001G004100--Sobic007G187600 Sobic001G004100--Sobic001G013300 Sobic009G113100 Sobic009G113100 Sobic001G004100--Sobic009G113100 Sobic009G255600 Sobic009G255600 Sobic001G004100--Sobic009G255600 Sobic001G408600 Sobic001G408600 Sobic001G004100--Sobic001G408600 Sobic001G004100--Sobic001G373000 Sobic002G142700 Sobic002G142700 Sobic001G004100--Sobic002G142700 Sobic001G034500 Sobic001G034500 Sobic001G004100--Sobic001G034500 Sobic010G215900--Sobic003G409200 Sobic010G215900--Sobic004G285000 Sobic010G215900--Sobic004G111000 Sobic010G215900--Sobic001G346900 Sobic010G215900--Sobic001G013300 Sobic006G226300 Sobic006G226300 Sobic010G215900--Sobic006G226300 Sobic010G215900--Sobic008G147200 Sobic010G215900--Sobic003G042400 Sobic004G155600 Sobic004G155600 Sobic010G215900--Sobic004G155600 Sobic003G409200--Sobic001G346900 Sobic003G409200--Sobic010G215900 Sobic003G409200--Sobic004G111000 Sobic008G057000 Sobic008G057000 Sobic003G409200--Sobic008G057000 Sobic003G409200--Sobic003G427100 Sobic001G501800 Sobic001G501800 Sobic003G409200--Sobic001G501800 Sobic003G409200--Sobic004G285000 Sobic010G279900 Sobic010G279900 Sobic003G409200--Sobic010G279900 Sobic003G409200--Sobic002G145800 Sobic001G042200 Sobic001G042200 Sobic007G187600--Sobic001G042200 Sobic010G266500 Sobic010G266500 Sobic007G187600--Sobic010G266500 Sobic001G168900 Sobic001G168900 Sobic007G187600--Sobic001G168900 Sobic010G077500 Sobic010G077500 Sobic007G187600--Sobic010G077500 Sobic007G187600--Sobic001G023800 Sobic008G173100 Sobic008G173100 Sobic007G187600--Sobic008G173100 Sobic007G187600--Sobic001G346900 Sobic007G187600--Sobic001G004100 Sobic007G187600--Sobic003G416700 Sobic001G023800--Sobic010G266500 Sobic001G023800--Sobic007G187600 Sobic001G023800--Sobic010G186600 Sobic001G023800--Sobic002G005000 Sobic001G023800--Sobic001G373000 Sobic001G023800--Sobic003G427100 Sobic001G023800--Sobic001G013300 Sobic008G164600 Sobic008G164600 Sobic001G023800--Sobic008G164600 Sobic001G023800--Sobic001G291800
Octagon: transcription factors


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