Gene annotation
Transcriptome id Sobic.009G113100.3,Sobic.009G113100.2,Sobic.009G113100.1
Synonym serine/arginine-rich (SR) family, ATSRP34, Sb09g018110, SR1, sb-SC30, SRP34
Functional annotation Putative splicing factor (PubMedID : 24356560)
RNA recognition motif containing protein, expressed
UniProt M1H586 , M1HAJ1 , M1HAJ5 , M1H9C8 , A0A1B6P7U1 , M1HJ45
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF487 PTHR24012:SF487 PTHR24012
NCBI CDD KOG0106; Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) KOG0105Alternative splicing factor ASF/SF2 (RRM superfamily)
KEGG Orthology K12890; SFRS1, ASF, splicing factor, arginine/serine-rich 1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G02840 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os05g30140.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a043349
Brachypodium KQK04152 , KQK04151 , KQK04150 , KQK06688
Barley -
Wheat TraesCS1A02G229900 , TraesCS1A02G229900 , TraesCS1D02G232100 , TraesCS1D02G232100 , TraesCS1B02G244200 , TraesCS1B02G244200 , TraesCS1B02G244200
Populus -


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cDNA sequences
Sobic.009G113100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G069200 glycine-rich protein, putative, expressed -
2 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
3 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
4 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.002G208400 regulator protein, putative, expressed -
6 Sobic.007G187600 pentatricopeptide, putative, expressed -
7 Sobic.003G214700 transcriptional corepressor LEUNIG, putative, expressed -
8 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
9 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
10 Sobic.001G423300 outer membrane protein, OMP85 family, putative, expressed -
11 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
12 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
13 Sobic.006G049100 expressed protein -
14 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
15 Sobic.002G390400 expressed protein -
16 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
17 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
18 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
19 Sobic.006G257600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05609: UCHL3, ubiquitin carboxyl-terminal hydrolase L3
20 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -


Gene co-expression network
sample Sobic009G113100 Sobic009G113100 Sobic009G069200 Sobic009G069200 Sobic009G113100--Sobic009G069200 Sobic001G090300 Sobic001G090300 Sobic009G113100--Sobic001G090300 Sobic005G198200 Sobic005G198200 Sobic009G113100--Sobic005G198200 Sobic001G004100 Sobic001G004100 Sobic009G113100--Sobic001G004100 Sobic002G208400 Sobic002G208400 Sobic009G113100--Sobic002G208400 Sobic007G187600 Sobic007G187600 Sobic009G113100--Sobic007G187600 Sobic003G214700 Sobic003G214700 Sobic009G113100--Sobic003G214700 Sobic001G013300 Sobic001G013300 Sobic009G113100--Sobic001G013300 Sobic006G061100 Sobic006G061100 Sobic009G113100--Sobic006G061100 Sobic009G069200--Sobic009G113100 Sobic003G415100 Sobic003G415100 Sobic009G069200--Sobic003G415100 Sobic010G038900 Sobic010G038900 Sobic009G069200--Sobic010G038900 Sobic002G390400 Sobic002G390400 Sobic009G069200--Sobic002G390400 Sobic009G069200--Sobic005G198200 Sobic002G315100 Sobic002G315100 Sobic009G069200--Sobic002G315100 Sobic009G069200--Sobic001G090300 Sobic005G160200 Sobic005G160200 Sobic009G069200--Sobic005G160200 Sobic008G045800 Sobic008G045800 Sobic009G069200--Sobic008G045800 Sobic005G199200 Sobic005G199200 Sobic001G090300--Sobic005G199200 Sobic001G090300--Sobic009G113100 Sobic005G040900 Sobic005G040900 Sobic001G090300--Sobic005G040900 Sobic001G090300--Sobic003G415100 Sobic009G074700 Sobic009G074700 Sobic001G090300--Sobic009G074700 Sobic001G090300--Sobic007G187600 Sobic009G129600 Sobic009G129600 Sobic001G090300--Sobic009G129600 Sobic009G000400 Sobic009G000400 Sobic001G090300--Sobic009G000400 Sobic001G334100 Sobic001G334100 Sobic001G090300--Sobic001G334100 Sobic009G059400 Sobic009G059400 Sobic005G198200--Sobic009G059400 Sobic005G198200--Sobic009G113100 Sobic009G137900 Sobic009G137900 Sobic005G198200--Sobic009G137900 Sobic005G072400 Sobic005G072400 Sobic005G198200--Sobic005G072400 Sobic009G017200 Sobic009G017200 Sobic005G198200--Sobic009G017200 Sobic001G472100 Sobic001G472100 Sobic005G198200--Sobic001G472100 Sobic008G111800 Sobic008G111800 Sobic005G198200--Sobic008G111800 Sobic004G180900 Sobic004G180900 Sobic005G198200--Sobic004G180900 Sobic010G077500 Sobic010G077500 Sobic005G198200--Sobic010G077500 Sobic004G031300 Sobic004G031300 Sobic001G004100--Sobic004G031300 Sobic001G004100--Sobic007G187600 Sobic001G004100--Sobic001G013300 Sobic001G004100--Sobic009G113100 Sobic009G255600 Sobic009G255600 Sobic001G004100--Sobic009G255600 Sobic001G408600 Sobic001G408600 Sobic001G004100--Sobic001G408600 Sobic001G373000 Sobic001G373000 Sobic001G004100--Sobic001G373000 Sobic002G142700 Sobic002G142700 Sobic001G004100--Sobic002G142700 Sobic001G034500 Sobic001G034500 Sobic001G004100--Sobic001G034500 Sobic002G208400--Sobic002G142700 Sobic001G115500 Sobic001G115500 Sobic002G208400--Sobic001G115500 Sobic002G208400--Sobic009G113100 Sobic006G032600 Sobic006G032600 Sobic002G208400--Sobic006G032600 Sobic003G008600 Sobic003G008600 Sobic002G208400--Sobic003G008600 Sobic004G030400 Sobic004G030400 Sobic002G208400--Sobic004G030400 Sobic003G259600 Sobic003G259600 Sobic002G208400--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic002G208400--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic002G208400--Sobic003G129300 Sobic001G042200 Sobic001G042200 Sobic007G187600--Sobic001G042200 Sobic010G266500 Sobic010G266500 Sobic007G187600--Sobic010G266500 Sobic001G168900 Sobic001G168900 Sobic007G187600--Sobic001G168900 Sobic007G187600--Sobic010G077500 Sobic001G023800 Sobic001G023800 Sobic007G187600--Sobic001G023800 Sobic008G173100 Sobic008G173100 Sobic007G187600--Sobic008G173100 Sobic001G346900 Sobic001G346900 Sobic007G187600--Sobic001G346900 Sobic007G187600--Sobic001G004100 Sobic003G416700 Sobic003G416700 Sobic007G187600--Sobic003G416700 Sobic003G214700--Sobic001G013300 Sobic003G214700--Sobic009G113100 Sobic003G052800 Sobic003G052800 Sobic003G214700--Sobic003G052800 Sobic003G214700--Sobic001G004100 Sobic003G214700--Sobic001G346900 Sobic001G480550 Sobic001G480550 Sobic003G214700--Sobic001G480550 Sobic005G191700 Sobic005G191700 Sobic003G214700--Sobic005G191700 Sobic003G409200 Sobic003G409200 Sobic003G214700--Sobic003G409200 Sobic006G245900 Sobic006G245900 Sobic003G214700--Sobic006G245900 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic008G147200 Sobic008G147200 Sobic001G013300--Sobic008G147200 Sobic001G013300--Sobic001G346900 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic001G013300--Sobic003G409200 Sobic001G013300--Sobic007G187600 Sobic001G013300--Sobic001G023800 Sobic004G075700 Sobic004G075700 Sobic006G061100--Sobic004G075700 Sobic003G026900 Sobic003G026900 Sobic006G061100--Sobic003G026900 Sobic009G060300 Sobic009G060300 Sobic006G061100--Sobic009G060300 Sobic010G207400 Sobic010G207400 Sobic006G061100--Sobic010G207400 Sobic006G015500 Sobic006G015500 Sobic006G061100--Sobic006G015500 Sobic004G154300 Sobic004G154300 Sobic006G061100--Sobic004G154300 Sobic006G061100--Sobic009G113100 Sobic004G311400 Sobic004G311400 Sobic006G061100--Sobic004G311400 Sobic009G132650 Sobic009G132650 Sobic006G061100--Sobic009G132650
Octagon: transcription factors


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