Gene annotation
Transcriptome id Sobic.002G390400.1
Synonym Sb02g040600
Functional annotation expressed protein
UniProt C5X3B3
Pfam PF01936
Panther DB PTHR14379 PTHR14379:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0010468; regulation of gene expression GO:0005777peroxisome


Orthologs (automatic annotation)
TAIR AT5G61190 : putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
RAP-DB (Rice) LOC_Os07g44320.1 : expressed protein
MaizeGDB (Corn) Zm00025a048915 , Zm00025a015279 , Zm00025a015280
Brachypodium -
Barley HORVU2Hr1G027050.1 , HORVU2Hr1G027050.2 , HORVU2Hr1G027050.3 , HORVU2Hr1G027170.8 , HORVU2Hr1G027170.7 , HORVU2Hr1G027170.6 , HORVU2Hr1G027170.5 , HORVU2Hr1G027170.4 , HORVU2Hr1G027170.3 , HORVU2Hr1G027170.2 , HORVU2Hr1G027170.1
Wheat TraesCS2D02G155400 , TraesCS2D02G155300 , TraesCS2D02G155300 , TraesCS2D02G155300 , TraesCS2A02G150200 , TraesCS2B02G175500 , TraesCS2A02G150300 , TraesCS2B02G175400 , TraesCS2B02G175400
Populus -


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cDNA sequences
Sobic.002G390400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
2 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
3 Sobic.009G069200 glycine-rich protein, putative, expressed -
4 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
5 Sobic.005G030100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2-isopropylmalate synthase B, putative, expressed K01649: leuA, 2-isopropylmalate synthase
6 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
7 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
8 Sobic.008G156200 zinc finger family protein, putative, expressed K16277: E3 ubiquitin-protein ligase DRIP
9 Sobic.001G429200 AT hook motif family protein, expressed -
10 Sobic.002G385300 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
12 Sobic.008G045800 PHD-finger family protein, expressed -
13 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
14 Sobic.009G257500 expressed protein -
15 Sobic.007G018700 kinesin motor domain containing protein, putative, expressed -
16 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
17 Sobic.010G207400 protein kinase domain containing protein, expressed -
18 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
19 Sobic.003G026900 expressed protein -
20 Sobic.002G252900 DNA repair ATPase-related, putative, expressed -


Gene co-expression network
sample Sobic002G390400 Sobic002G390400 Sobic001G135500 Sobic001G135500 Sobic002G390400--Sobic001G135500 Sobic003G415100 Sobic003G415100 Sobic002G390400--Sobic003G415100 Sobic009G069200 Sobic009G069200 Sobic002G390400--Sobic009G069200 Sobic005G198200 Sobic005G198200 Sobic002G390400--Sobic005G198200 Sobic005G030100 Sobic005G030100 Sobic002G390400--Sobic005G030100 Sobic009G030400 Sobic009G030400 Sobic002G390400--Sobic009G030400 Sobic009G113100 Sobic009G113100 Sobic002G390400--Sobic009G113100 Sobic008G156200 Sobic008G156200 Sobic002G390400--Sobic008G156200 Sobic001G429200 Sobic001G429200 Sobic002G390400--Sobic001G429200 Sobic003G212900 Sobic003G212900 Sobic001G135500--Sobic003G212900 Sobic010G077500 Sobic010G077500 Sobic001G135500--Sobic010G077500 Sobic002G245000 Sobic002G245000 Sobic001G135500--Sobic002G245000 Sobic007G187600 Sobic007G187600 Sobic001G135500--Sobic007G187600 Sobic001G135500--Sobic002G390400 Sobic008G021000 Sobic008G021000 Sobic001G135500--Sobic008G021000 Sobic009G045200 Sobic009G045200 Sobic001G135500--Sobic009G045200 Sobic001G005600 Sobic001G005600 Sobic001G135500--Sobic001G005600 Sobic001G034500 Sobic001G034500 Sobic001G135500--Sobic001G034500 Sobic001G346700 Sobic001G346700 Sobic003G415100--Sobic001G346700 Sobic003G415100--Sobic009G069200 Sobic003G415100--Sobic002G390400 Sobic009G257500 Sobic009G257500 Sobic003G415100--Sobic009G257500 Sobic001G090300 Sobic001G090300 Sobic003G415100--Sobic001G090300 Sobic001G123201 Sobic001G123201 Sobic003G415100--Sobic001G123201 Sobic006G126600 Sobic006G126600 Sobic003G415100--Sobic006G126600 Sobic006G091850 Sobic006G091850 Sobic003G415100--Sobic006G091850 Sobic003G253400 Sobic003G253400 Sobic003G415100--Sobic003G253400 Sobic009G069200--Sobic009G113100 Sobic009G069200--Sobic003G415100 Sobic010G038900 Sobic010G038900 Sobic009G069200--Sobic010G038900 Sobic009G069200--Sobic002G390400 Sobic009G069200--Sobic005G198200 Sobic002G315100 Sobic002G315100 Sobic009G069200--Sobic002G315100 Sobic009G069200--Sobic001G090300 Sobic005G160200 Sobic005G160200 Sobic009G069200--Sobic005G160200 Sobic008G045800 Sobic008G045800 Sobic009G069200--Sobic008G045800 Sobic009G059400 Sobic009G059400 Sobic005G198200--Sobic009G059400 Sobic005G198200--Sobic009G113100 Sobic009G137900 Sobic009G137900 Sobic005G198200--Sobic009G137900 Sobic005G072400 Sobic005G072400 Sobic005G198200--Sobic005G072400 Sobic009G017200 Sobic009G017200 Sobic005G198200--Sobic009G017200 Sobic001G472100 Sobic001G472100 Sobic005G198200--Sobic001G472100 Sobic008G111800 Sobic008G111800 Sobic005G198200--Sobic008G111800 Sobic004G180900 Sobic004G180900 Sobic005G198200--Sobic004G180900 Sobic005G198200--Sobic010G077500 Sobic005G030100--Sobic009G030400 Sobic005G030100--Sobic002G390400 Sobic010G207400 Sobic010G207400 Sobic005G030100--Sobic010G207400 Sobic007G150700 Sobic007G150700 Sobic005G030100--Sobic007G150700 Sobic003G161800 Sobic003G161800 Sobic005G030100--Sobic003G161800 Sobic008G052200 Sobic008G052200 Sobic005G030100--Sobic008G052200 Sobic006G061100 Sobic006G061100 Sobic005G030100--Sobic006G061100 Sobic001G423300 Sobic001G423300 Sobic005G030100--Sobic001G423300 Sobic008G160500 Sobic008G160500 Sobic005G030100--Sobic008G160500 Sobic009G030400--Sobic005G030100 Sobic009G002000 Sobic009G002000 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic009G030400--Sobic003G161800 Sobic009G030400--Sobic008G160500 Sobic009G030400--Sobic002G390400 Sobic010G141600 Sobic010G141600 Sobic009G030400--Sobic010G141600 Sobic009G030400--Sobic006G061100 Sobic009G055600 Sobic009G055600 Sobic009G030400--Sobic009G055600 Sobic009G113100--Sobic009G069200 Sobic009G113100--Sobic001G090300 Sobic009G113100--Sobic005G198200 Sobic001G004100 Sobic001G004100 Sobic009G113100--Sobic001G004100 Sobic002G208400 Sobic002G208400 Sobic009G113100--Sobic002G208400 Sobic009G113100--Sobic007G187600 Sobic003G214700 Sobic003G214700 Sobic009G113100--Sobic003G214700 Sobic001G013300 Sobic001G013300 Sobic009G113100--Sobic001G013300 Sobic009G113100--Sobic006G061100 Sobic008G156200--Sobic010G207400 Sobic002G247300 Sobic002G247300 Sobic008G156200--Sobic002G247300 Sobic003G035500 Sobic003G035500 Sobic008G156200--Sobic003G035500 Sobic004G075700 Sobic004G075700 Sobic008G156200--Sobic004G075700 Sobic005G131800 Sobic005G131800 Sobic008G156200--Sobic005G131800 Sobic003G412200 Sobic003G412200 Sobic008G156200--Sobic003G412200 Sobic010G112700 Sobic010G112700 Sobic008G156200--Sobic010G112700 Sobic002G016900 Sobic002G016900 Sobic008G156200--Sobic002G016900 Sobic004G038900 Sobic004G038900 Sobic008G156200--Sobic004G038900 Sobic001G429200--Sobic002G390400 Sobic003G180100 Sobic003G180100 Sobic001G429200--Sobic003G180100 Sobic001G429200--Sobic001G346700 Sobic004G050300 Sobic004G050300 Sobic001G429200--Sobic004G050300 Sobic010G052400 Sobic010G052400 Sobic001G429200--Sobic010G052400 Sobic001G429200--Sobic009G069200 Sobic001G115500 Sobic001G115500 Sobic001G429200--Sobic001G115500 Sobic001G507200 Sobic001G507200 Sobic001G429200--Sobic001G507200 Sobic001G429200--Sobic003G415100
Octagon: transcription factors


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