Gene annotation
Transcriptome id Sobic.001G135500.1
Synonym UPL7, Sb01g011845
Functional annotation HECT-domain domain containing protein, expressed
UniProt C5WPK8
Pfam PF00632
Panther DB PTHR11254
NCBI CDD -
KEGG Orthology K10588; ubiquitin-protein ligase E3 B
Gene Ontology GO:0004842; ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G53090 : ubiquitin-protein ligase 7
RAP-DB (Rice) LOC_Os03g47949.1 : HECT-domain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017110
Brachypodium KQK13766
Barley HORVU4Hr1G004090.32 , HORVU4Hr1G004090.31 , HORVU4Hr1G004090.30 , HORVU4Hr1G004090.24 , HORVU4Hr1G004090.25 , HORVU4Hr1G004090.26 , HORVU4Hr1G004090.27 , HORVU4Hr1G004090.20 , HORVU4Hr1G004090.21 , HORVU4Hr1G004090.22 , HORVU4Hr1G004090.23 , HORVU4Hr1G004090.28 , HORVU4Hr1G004090.29 , HORVU4Hr1G004090.19 , HORVU4Hr1G004090.18 , HORVU4Hr1G004090.11 , HORVU4Hr1G004090.10 , HORVU4Hr1G004090.13 , HORVU4Hr1G004090.12 , HORVU4Hr1G004090.15 , HORVU4Hr1G004090.14 , HORVU4Hr1G004090.17 , HORVU4Hr1G004090.16 , HORVU4Hr1G004090.5 , HORVU4Hr1G004090.4 , HORVU4Hr1G004090.7 , HORVU4Hr1G004090.1 , HORVU4Hr1G004090.9 , HORVU4Hr1G004090.8 , HORVU4Hr1G004090.6 , HORVU4Hr1G004090.3 , HORVU4Hr1G004090.2
Wheat TraesCS4B02G027200 , TraesCS4A02G285800 , TraesCS4A02G285800 , TraesCS4A02G285800 , TraesCS4D02G025000 , TraesCS4D02G025000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G212900 zinc ion binding protein, putative, expressed -
2 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
3 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
4 Sobic.007G187600 pentatricopeptide, putative, expressed -
5 Sobic.002G390400 expressed protein -
6 Sobic.008G021000 exostosin family domain containing protein, expressed -
7 Sobic.009G045200 double-stranded RNA binding motif containing protein, expressed -
8 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
9 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
10 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
11 Sobic.006G049100 expressed protein -
12 Sobic.009G020500 expressed protein -
13 Sobic.001G222000 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.003G150900 protein transport protein-related, putative, expressed -
15 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
16 Sobic.001G023800 expressed protein -
17 Sobic.005G114800 protein transport protein, putative, expressed K14007: protein transport protein SEC24
18 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
19 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
20 Sobic.006G224800 expressed protein -


Gene co-expression network
sample Sobic001G135500 Sobic001G135500 Sobic003G212900 Sobic003G212900 Sobic001G135500--Sobic003G212900 Sobic010G077500 Sobic010G077500 Sobic001G135500--Sobic010G077500 Sobic002G245000 Sobic002G245000 Sobic001G135500--Sobic002G245000 Sobic007G187600 Sobic007G187600 Sobic001G135500--Sobic007G187600 Sobic002G390400 Sobic002G390400 Sobic001G135500--Sobic002G390400 Sobic008G021000 Sobic008G021000 Sobic001G135500--Sobic008G021000 Sobic009G045200 Sobic009G045200 Sobic001G135500--Sobic009G045200 Sobic001G005600 Sobic001G005600 Sobic001G135500--Sobic001G005600 Sobic001G034500 Sobic001G034500 Sobic001G135500--Sobic001G034500 Sobic003G212900--Sobic001G135500 Sobic003G212900--Sobic010G077500 Sobic002G422100 Sobic002G422100 Sobic003G212900--Sobic002G422100 Sobic003G416700 Sobic003G416700 Sobic003G212900--Sobic003G416700 Sobic001G042200 Sobic001G042200 Sobic003G212900--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic003G212900--Sobic004G309900 Sobic006G224800 Sobic006G224800 Sobic003G212900--Sobic006G224800 Sobic008G058800 Sobic008G058800 Sobic003G212900--Sobic008G058800 Sobic002G295500 Sobic002G295500 Sobic003G212900--Sobic002G295500 Sobic010G077500--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic010G077500--Sobic006G049100 Sobic004G345400 Sobic004G345400 Sobic010G077500--Sobic004G345400 Sobic010G077500--Sobic007G187600 Sobic010G077500--Sobic003G212900 Sobic010G077500--Sobic008G058800 Sobic007G056500 Sobic007G056500 Sobic010G077500--Sobic007G056500 Sobic002G063900 Sobic002G063900 Sobic010G077500--Sobic002G063900 Sobic009G129600 Sobic009G129600 Sobic010G077500--Sobic009G129600 Sobic002G245000--Sobic003G212900 Sobic007G000200 Sobic007G000200 Sobic002G245000--Sobic007G000200 Sobic002G029100 Sobic002G029100 Sobic002G245000--Sobic002G029100 Sobic001G542450 Sobic001G542450 Sobic002G245000--Sobic001G542450 Sobic002G245000--Sobic001G135500 Sobic003G062300 Sobic003G062300 Sobic002G245000--Sobic003G062300 Sobic008G002300 Sobic008G002300 Sobic002G245000--Sobic008G002300 Sobic009G020500 Sobic009G020500 Sobic002G245000--Sobic009G020500 Sobic006G032300 Sobic006G032300 Sobic002G245000--Sobic006G032300 Sobic007G187600--Sobic001G042200 Sobic010G266500 Sobic010G266500 Sobic007G187600--Sobic010G266500 Sobic001G168900 Sobic001G168900 Sobic007G187600--Sobic001G168900 Sobic007G187600--Sobic010G077500 Sobic001G023800 Sobic001G023800 Sobic007G187600--Sobic001G023800 Sobic008G173100 Sobic008G173100 Sobic007G187600--Sobic008G173100 Sobic001G346900 Sobic001G346900 Sobic007G187600--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic007G187600--Sobic001G004100 Sobic007G187600--Sobic003G416700 Sobic002G390400--Sobic001G135500 Sobic003G415100 Sobic003G415100 Sobic002G390400--Sobic003G415100 Sobic009G069200 Sobic009G069200 Sobic002G390400--Sobic009G069200 Sobic005G198200 Sobic005G198200 Sobic002G390400--Sobic005G198200 Sobic005G030100 Sobic005G030100 Sobic002G390400--Sobic005G030100 Sobic009G030400 Sobic009G030400 Sobic002G390400--Sobic009G030400 Sobic009G113100 Sobic009G113100 Sobic002G390400--Sobic009G113100 Sobic008G156200 Sobic008G156200 Sobic002G390400--Sobic008G156200 Sobic001G429200 Sobic001G429200 Sobic002G390400--Sobic001G429200 Sobic009G166600 Sobic009G166600 Sobic008G021000--Sobic009G166600 Sobic006G224300 Sobic006G224300 Sobic008G021000--Sobic006G224300 Sobic008G021000--Sobic001G005600 Sobic008G021000--Sobic003G212900 Sobic002G313900 Sobic002G313900 Sobic008G021000--Sobic002G313900 Sobic006G203300 Sobic006G203300 Sobic008G021000--Sobic006G203300 Sobic008G021000--Sobic001G135500 Sobic003G150900 Sobic003G150900 Sobic008G021000--Sobic003G150900 Sobic008G021000--Sobic006G224800 Sobic001G051700 Sobic001G051700 Sobic009G045200--Sobic001G051700 Sobic009G045200--Sobic003G416700 Sobic001G393700 Sobic001G393700 Sobic009G045200--Sobic001G393700 Sobic009G045200--Sobic006G224800 Sobic010G099800 Sobic010G099800 Sobic009G045200--Sobic010G099800 Sobic009G045200--Sobic007G187600 Sobic002G430300 Sobic002G430300 Sobic009G045200--Sobic002G430300 Sobic006G180700 Sobic006G180700 Sobic009G045200--Sobic006G180700 Sobic001G335900 Sobic001G335900 Sobic009G045200--Sobic001G335900 Sobic009G160600 Sobic009G160600 Sobic001G005600--Sobic009G160600 Sobic010G129600 Sobic010G129600 Sobic001G005600--Sobic010G129600 Sobic007G042900 Sobic007G042900 Sobic001G005600--Sobic007G042900 Sobic008G140400 Sobic008G140400 Sobic001G005600--Sobic008G140400 Sobic001G005600--Sobic003G150900 Sobic004G323700 Sobic004G323700 Sobic001G005600--Sobic004G323700 Sobic004G068500 Sobic004G068500 Sobic001G005600--Sobic004G068500 Sobic001G005600--Sobic008G021000 Sobic001G161900 Sobic001G161900 Sobic001G005600--Sobic001G161900 Sobic001G477700 Sobic001G477700 Sobic001G034500--Sobic001G477700 Sobic003G284000 Sobic003G284000 Sobic001G034500--Sobic003G284000 Sobic006G154100 Sobic006G154100 Sobic001G034500--Sobic006G154100 Sobic001G034500--Sobic001G004100 Sobic001G034500--Sobic001G135500 Sobic001G413800 Sobic001G413800 Sobic001G034500--Sobic001G413800 Sobic001G034500--Sobic003G212900 Sobic001G097500 Sobic001G097500 Sobic001G034500--Sobic001G097500 Sobic001G034500--Sobic007G042900
Octagon: transcription factors


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