Gene annotation
Transcriptome id Sobic.001G023800.1,Sobic.001G023800.3,Sobic.001G023800.2
Synonym
Functional annotation expressed protein
UniProt A0A1B6QGY9 , A0A1B6QH22
Pfam PF05623
Panther DB PTHR31343 PTHR31343:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G16100 : Protein of unknown function (DUF789)
RAP-DB (Rice) LOC_Os03g61580.1 : expressed protein
MaizeGDB (Corn) Zm00025a045505 , Zm00025a008926 , Zm00025a016378 , Zm00025a013608
Brachypodium PNT73857 , PNT73858 , KQK12332 , KQK12333 , KQK20259
Barley HORVU5Hr1G116340.4 , HORVU5Hr1G116340.2
Wheat TraesCS5D02G508900 , TraesCS5D02G508900 , TraesCS5D02G508900 , TraesCS4A02G364600 , TraesCS4A02G364600 , TraesCS5B02G508900 , TraesCS5B02G508900 , TraesCS5B02G508900 , TraesCS5B02G508900
Populus -


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cDNA sequences
Sobic.001G023800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
2 Sobic.007G187600 pentatricopeptide, putative, expressed -
3 Sobic.010G186600 expressed protein -
4 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
5 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
6 Sobic.003G427100 WD domain, G-beta repeat domain containing protein, expressed K15542: polyadenylation factor subunit 2
7 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
8 Sobic.008G164600 expressed protein -
9 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
10 Sobic.010G219000 tRNA pseudouridine synthase family protein, putative, expressed -
11 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
12 Sobic.002G357100 SUMO-activating enzyme subunit 2, putative, expressed K10685: UBLE1B, SAE2, ubiquitin-like 1-activating enzyme E1 B
13 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
15 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
16 Sobic.010G118000 PHD-finger family protein, expressed K17586: PHD and RING finger domain-containing protein 1
17 Sobic.004G155600 dnaJ domain containing protein, expressed -
18 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
19 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
20 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -


Gene co-expression network
sample Sobic001G023800 Sobic001G023800 Sobic010G266500 Sobic010G266500 Sobic001G023800--Sobic010G266500 Sobic007G187600 Sobic007G187600 Sobic001G023800--Sobic007G187600 Sobic010G186600 Sobic010G186600 Sobic001G023800--Sobic010G186600 Sobic002G005000 Sobic002G005000 Sobic001G023800--Sobic002G005000 Sobic001G373000 Sobic001G373000 Sobic001G023800--Sobic001G373000 Sobic003G427100 Sobic003G427100 Sobic001G023800--Sobic003G427100 Sobic001G013300 Sobic001G013300 Sobic001G023800--Sobic001G013300 Sobic008G164600 Sobic008G164600 Sobic001G023800--Sobic008G164600 Sobic001G291800 Sobic001G291800 Sobic001G023800--Sobic001G291800 Sobic010G266500--Sobic008G164600 Sobic010G266500--Sobic007G187600 Sobic010G266500--Sobic001G023800 Sobic001G461400 Sobic001G461400 Sobic010G266500--Sobic001G461400 Sobic002G371700 Sobic002G371700 Sobic010G266500--Sobic002G371700 Sobic003G416700 Sobic003G416700 Sobic010G266500--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic010G266500--Sobic002G145800 Sobic004G155600 Sobic004G155600 Sobic010G266500--Sobic004G155600 Sobic010G118000 Sobic010G118000 Sobic010G266500--Sobic010G118000 Sobic001G042200 Sobic001G042200 Sobic007G187600--Sobic001G042200 Sobic007G187600--Sobic010G266500 Sobic001G168900 Sobic001G168900 Sobic007G187600--Sobic001G168900 Sobic010G077500 Sobic010G077500 Sobic007G187600--Sobic010G077500 Sobic007G187600--Sobic001G023800 Sobic008G173100 Sobic008G173100 Sobic007G187600--Sobic008G173100 Sobic001G346900 Sobic001G346900 Sobic007G187600--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic007G187600--Sobic001G004100 Sobic007G187600--Sobic003G416700 Sobic009G255600 Sobic009G255600 Sobic010G186600--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic010G186600--Sobic008G147200 Sobic010G186600--Sobic002G145800 Sobic010G186600--Sobic001G291800 Sobic010G186600--Sobic002G005000 Sobic010G186600--Sobic001G023800 Sobic010G186600--Sobic010G266500 Sobic001G052400 Sobic001G052400 Sobic010G186600--Sobic001G052400 Sobic003G409200 Sobic003G409200 Sobic010G186600--Sobic003G409200 Sobic002G005000--Sobic001G373000 Sobic002G005000--Sobic010G186600 Sobic002G005000--Sobic001G291800 Sobic002G005000--Sobic001G023800 Sobic002G005000--Sobic001G052400 Sobic004G307500 Sobic004G307500 Sobic002G005000--Sobic004G307500 Sobic002G005000--Sobic008G147200 Sobic004G340400 Sobic004G340400 Sobic002G005000--Sobic004G340400 Sobic002G005000--Sobic001G013300 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic005G079800 Sobic005G079800 Sobic003G427100--Sobic005G079800 Sobic007G044100 Sobic007G044100 Sobic003G427100--Sobic007G044100 Sobic003G427100--Sobic003G409200 Sobic004G285000 Sobic004G285000 Sobic003G427100--Sobic004G285000 Sobic001G398800 Sobic001G398800 Sobic003G427100--Sobic001G398800 Sobic002G153700 Sobic002G153700 Sobic003G427100--Sobic002G153700 Sobic004G156500 Sobic004G156500 Sobic003G427100--Sobic004G156500 Sobic003G438900 Sobic003G438900 Sobic003G427100--Sobic003G438900 Sobic003G307000 Sobic003G307000 Sobic003G427100--Sobic003G307000 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic001G013300--Sobic008G147200 Sobic001G013300--Sobic001G346900 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic001G013300--Sobic003G409200 Sobic001G013300--Sobic007G187600 Sobic001G013300--Sobic001G023800 Sobic008G164600--Sobic010G266500 Sobic006G040800 Sobic006G040800 Sobic008G164600--Sobic006G040800 Sobic001G145400 Sobic001G145400 Sobic008G164600--Sobic001G145400 Sobic007G225100 Sobic007G225100 Sobic008G164600--Sobic007G225100 Sobic004G256500 Sobic004G256500 Sobic008G164600--Sobic004G256500 Sobic008G164600--Sobic010G118000 Sobic008G164600--Sobic002G145800 Sobic004G246100 Sobic004G246100 Sobic008G164600--Sobic004G246100 Sobic008G164600--Sobic009G255600 Sobic001G291800--Sobic004G340400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic001G291800--Sobic010G186600 Sobic001G291800--Sobic009G255600 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G291800--Sobic001G168900
Octagon: transcription factors


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