Gene annotation
Transcriptome id Sobic.001G408600.1
Synonym Sb01g038600
Functional annotation RNA pseudouridine synthase, putative, expressed
UniProt A0A1Z5SA49
Pfam PF00849
Panther DB PTHR11079 PTHR11079:SF98
NCBI CDD KOG1919; RNA pseudouridylate synthases
KEGG Orthology -
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT3G52260 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os03g17920.2 : RNA pseudouridine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a001953
Brachypodium KQK22183
Barley HORVU4Hr1G056670.39 , HORVU4Hr1G056670.36 , HORVU4Hr1G056670.23 , HORVU4Hr1G056670.25 , HORVU4Hr1G056670.24 , HORVU4Hr1G056670.27 , HORVU4Hr1G056670.29 , HORVU4Hr1G056670.37 , HORVU4Hr1G056670.28 , HORVU4Hr1G056670.43 , HORVU4Hr1G056670.42 , HORVU4Hr1G056670.41 , HORVU4Hr1G056670.40 , HORVU4Hr1G056670.44 , HORVU5Hr1G024860.3 , HORVU5Hr1G024860.2 , HORVU5Hr1G024860.1 , HORVU4Hr1G056670.35 , HORVU4Hr1G056670.32 , HORVU4Hr1G056670.33 , HORVU4Hr1G056670.30 , HORVU5Hr1G024860.4 , HORVU4Hr1G056670.38 , HORVU4Hr1G056670.31 , HORVU4Hr1G056670.26 , HORVU4Hr1G056670.34
Wheat TraesCS4B02G196400 , TraesCS4A02G108200 , TraesCS4D02G196700 , TraesCS4D02G196700 , TraesCS4A02G108200
Populus -


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cDNA sequences
Sobic.001G408600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
2 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
3 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
4 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
5 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
7 Sobic.009G211200 tRNAHis guanylyltransferase family protein, expressed K10761: tRNA(His) guanylyltransferase
8 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
9 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
10 Sobic.002G075900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed K12670: oligosaccharyltransferase complex subunit beta
11 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
12 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
13 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
14 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
15 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
16 Sobic.006G178100 coiled-coil domain-containing protein 139, putative, expressed K07583: tRNA pseudouridine synthase 10
17 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
18 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
19 Sobic.001G542450 - -
20 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon


Gene co-expression network
sample Sobic001G408600 Sobic001G408600 Sobic003G246000 Sobic003G246000 Sobic001G408600--Sobic003G246000 Sobic001G373000 Sobic001G373000 Sobic001G408600--Sobic001G373000 Sobic001G461300 Sobic001G461300 Sobic001G408600--Sobic001G461300 Sobic007G089800 Sobic007G089800 Sobic001G408600--Sobic007G089800 Sobic001G004100 Sobic001G004100 Sobic001G408600--Sobic001G004100 Sobic006G125900 Sobic006G125900 Sobic001G408600--Sobic006G125900 Sobic009G211200 Sobic009G211200 Sobic001G408600--Sobic009G211200 Sobic006G002800 Sobic006G002800 Sobic001G408600--Sobic006G002800 Sobic001G145400 Sobic001G145400 Sobic001G408600--Sobic001G145400 Sobic001G085800 Sobic001G085800 Sobic003G246000--Sobic001G085800 Sobic003G246000--Sobic001G408600 Sobic004G141800 Sobic004G141800 Sobic003G246000--Sobic004G141800 Sobic002G430300 Sobic002G430300 Sobic003G246000--Sobic002G430300 Sobic003G246000--Sobic001G145400 Sobic002G386600 Sobic002G386600 Sobic003G246000--Sobic002G386600 Sobic003G246000--Sobic006G125900 Sobic002G160700 Sobic002G160700 Sobic003G246000--Sobic002G160700 Sobic005G199200 Sobic005G199200 Sobic003G246000--Sobic005G199200 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic002G372500 Sobic002G372500 Sobic001G461300--Sobic002G372500 Sobic006G193300 Sobic006G193300 Sobic001G461300--Sobic006G193300 Sobic001G461300--Sobic001G408600 Sobic001G461300--Sobic006G002800 Sobic009G234700 Sobic009G234700 Sobic001G461300--Sobic009G234700 Sobic002G371600 Sobic002G371600 Sobic001G461300--Sobic002G371600 Sobic001G461300--Sobic007G089800 Sobic001G461300--Sobic001G373000 Sobic004G224600 Sobic004G224600 Sobic001G461300--Sobic004G224600 Sobic007G089800--Sobic001G373000 Sobic007G089800--Sobic006G002800 Sobic007G089800--Sobic001G408600 Sobic004G315500 Sobic004G315500 Sobic007G089800--Sobic004G315500 Sobic007G089800--Sobic010G188000 Sobic007G089800--Sobic001G461300 Sobic007G089800--Sobic006G193300 Sobic010G205900 Sobic010G205900 Sobic007G089800--Sobic010G205900 Sobic010G186600 Sobic010G186600 Sobic007G089800--Sobic010G186600 Sobic004G031300 Sobic004G031300 Sobic001G004100--Sobic004G031300 Sobic007G187600 Sobic007G187600 Sobic001G004100--Sobic007G187600 Sobic001G004100--Sobic001G013300 Sobic009G113100 Sobic009G113100 Sobic001G004100--Sobic009G113100 Sobic009G255600 Sobic009G255600 Sobic001G004100--Sobic009G255600 Sobic001G004100--Sobic001G408600 Sobic001G004100--Sobic001G373000 Sobic002G142700 Sobic002G142700 Sobic001G004100--Sobic002G142700 Sobic001G034500 Sobic001G034500 Sobic001G004100--Sobic001G034500 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic004G340400 Sobic004G340400 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic009G211200--Sobic001G429600 Sobic009G211200--Sobic006G125900 Sobic009G211200--Sobic004G224600 Sobic001G401500 Sobic001G401500 Sobic009G211200--Sobic001G401500 Sobic002G105101 Sobic002G105101 Sobic009G211200--Sobic002G105101 Sobic009G101200 Sobic009G101200 Sobic009G211200--Sobic009G101200 Sobic009G211200--Sobic006G002800 Sobic005G108000 Sobic005G108000 Sobic009G211200--Sobic005G108000 Sobic001G393900 Sobic001G393900 Sobic009G211200--Sobic001G393900 Sobic003G308500 Sobic003G308500 Sobic006G002800--Sobic003G308500 Sobic006G002800--Sobic004G224600 Sobic002G150700 Sobic002G150700 Sobic006G002800--Sobic002G150700 Sobic006G002800--Sobic001G145400 Sobic003G146600 Sobic003G146600 Sobic006G002800--Sobic003G146600 Sobic010G007100 Sobic010G007100 Sobic006G002800--Sobic010G007100 Sobic004G321700 Sobic004G321700 Sobic006G002800--Sobic004G321700 Sobic006G002800--Sobic009G234700 Sobic008G147200 Sobic008G147200 Sobic006G002800--Sobic008G147200 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000
Octagon: transcription factors


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