Gene annotation
Transcriptome id Sobic.006G178100.1
Synonym Sb06g025270
Functional annotation coiled-coil domain-containing protein 139, putative, expressed
UniProt A0A1B6PMK9
Pfam -
Panther DB PTHR21568
NCBI CDD KOG2364; Predicted pseudouridylate synthase
KEGG Orthology K07583; tRNA pseudouridine synthase 10
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G20410 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os04g47380.1 : coiled-coil domain-containing protein 139, putative, expressed
MaizeGDB (Corn) Zm00025a010218
Brachypodium PNT61654 , KQJ84039 , KQJ84041 , KQJ84040 , KQJ84038
Barley -
Wheat TraesCS2D02G403500 , TraesCS2D02G403500 , TraesCS2D02G403500 , TraesCS2A02G406600 , TraesCS2A02G406600 , TraesCS2B02G424200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G224600 expressed protein -
2 Sobic.009G254100 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
3 Sobic.005G108000 - -
4 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
5 Sobic.006G125500 expressed protein -
6 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
7 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
8 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
9 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
10 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
11 Sobic.005G026400 pentatricopeptide repeat domain containing protein, putative, expressed -
12 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
13 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
14 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
15 Sobic.002G171300 - -
16 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
17 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
18 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
19 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
20 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3


Gene co-expression network
sample Sobic006G178100 Sobic006G178100 Sobic004G224600 Sobic004G224600 Sobic006G178100--Sobic004G224600 Sobic009G254100 Sobic009G254100 Sobic006G178100--Sobic009G254100 Sobic005G108000 Sobic005G108000 Sobic006G178100--Sobic005G108000 Sobic003G143800 Sobic003G143800 Sobic006G178100--Sobic003G143800 Sobic006G125500 Sobic006G125500 Sobic006G178100--Sobic006G125500 Sobic003G146600 Sobic003G146600 Sobic006G178100--Sobic003G146600 Sobic002G371600 Sobic002G371600 Sobic006G178100--Sobic002G371600 Sobic001G408600 Sobic001G408600 Sobic006G178100--Sobic001G408600 Sobic004G322300 Sobic004G322300 Sobic006G178100--Sobic004G322300 Sobic006G002800 Sobic006G002800 Sobic004G224600--Sobic006G002800 Sobic004G224600--Sobic003G146600 Sobic001G376900 Sobic001G376900 Sobic004G224600--Sobic001G376900 Sobic004G224600--Sobic006G125500 Sobic002G235200 Sobic002G235200 Sobic004G224600--Sobic002G235200 Sobic009G246500 Sobic009G246500 Sobic004G224600--Sobic009G246500 Sobic003G042400 Sobic003G042400 Sobic004G224600--Sobic003G042400 Sobic001G145400 Sobic001G145400 Sobic004G224600--Sobic001G145400 Sobic006G086600 Sobic006G086600 Sobic004G224600--Sobic006G086600 Sobic006G106300 Sobic006G106300 Sobic009G254100--Sobic006G106300 Sobic003G256800 Sobic003G256800 Sobic009G254100--Sobic003G256800 Sobic009G254100--Sobic006G178100 Sobic009G254100--Sobic003G143800 Sobic002G381900 Sobic002G381900 Sobic009G254100--Sobic002G381900 Sobic001G097900 Sobic001G097900 Sobic009G254100--Sobic001G097900 Sobic002G398700 Sobic002G398700 Sobic009G254100--Sobic002G398700 Sobic005G026400 Sobic005G026400 Sobic009G254100--Sobic005G026400 Sobic009G254100--Sobic003G146600 Sobic001G346900 Sobic001G346900 Sobic005G108000--Sobic001G346900 Sobic002G127200 Sobic002G127200 Sobic005G108000--Sobic002G127200 Sobic005G108000--Sobic004G224600 Sobic005G108000--Sobic006G178100 Sobic002G171300 Sobic002G171300 Sobic005G108000--Sobic002G171300 Sobic009G211200 Sobic009G211200 Sobic005G108000--Sobic009G211200 Sobic010G080550 Sobic010G080550 Sobic005G108000--Sobic010G080550 Sobic005G108000--Sobic006G002800 Sobic006G245900 Sobic006G245900 Sobic005G108000--Sobic006G245900 Sobic008G124800 Sobic008G124800 Sobic003G143800--Sobic008G124800 Sobic006G021700 Sobic006G021700 Sobic003G143800--Sobic006G021700 Sobic001G015400 Sobic001G015400 Sobic003G143800--Sobic001G015400 Sobic007G155500 Sobic007G155500 Sobic003G143800--Sobic007G155500 Sobic008G092800 Sobic008G092800 Sobic003G143800--Sobic008G092800 Sobic002G340900 Sobic002G340900 Sobic003G143800--Sobic002G340900 Sobic004G141800 Sobic004G141800 Sobic003G143800--Sobic004G141800 Sobic005G114500 Sobic005G114500 Sobic003G143800--Sobic005G114500 Sobic003G405500 Sobic003G405500 Sobic003G143800--Sobic003G405500 Sobic003G308500 Sobic003G308500 Sobic006G125500--Sobic003G308500 Sobic006G125500--Sobic004G224600 Sobic006G125500--Sobic006G002800 Sobic006G125500--Sobic003G146600 Sobic006G125500--Sobic002G371600 Sobic010G080700 Sobic010G080700 Sobic006G125500--Sobic010G080700 Sobic004G332400 Sobic004G332400 Sobic006G125500--Sobic004G332400 Sobic006G125500--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic006G125500--Sobic005G010900 Sobic003G146600--Sobic003G308500 Sobic003G146600--Sobic004G224600 Sobic003G146600--Sobic006G002800 Sobic003G146600--Sobic002G235200 Sobic003G146600--Sobic001G145400 Sobic002G150700 Sobic002G150700 Sobic003G146600--Sobic002G150700 Sobic001G065100 Sobic001G065100 Sobic003G146600--Sobic001G065100 Sobic003G039000 Sobic003G039000 Sobic003G146600--Sobic003G039000 Sobic003G012000 Sobic003G012000 Sobic003G146600--Sobic003G012000 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic003G246000 Sobic003G246000 Sobic001G408600--Sobic003G246000 Sobic001G373000 Sobic001G373000 Sobic001G408600--Sobic001G373000 Sobic001G461300 Sobic001G461300 Sobic001G408600--Sobic001G461300 Sobic007G089800 Sobic007G089800 Sobic001G408600--Sobic007G089800 Sobic001G004100 Sobic001G004100 Sobic001G408600--Sobic001G004100 Sobic006G125900 Sobic006G125900 Sobic001G408600--Sobic006G125900 Sobic001G408600--Sobic009G211200 Sobic001G408600--Sobic006G002800 Sobic001G408600--Sobic001G145400 Sobic004G322300--Sobic002G371600 Sobic003G388000 Sobic003G388000 Sobic004G322300--Sobic003G388000 Sobic004G315500 Sobic004G315500 Sobic004G322300--Sobic004G315500 Sobic009G134900 Sobic009G134900 Sobic004G322300--Sobic009G134900 Sobic010G081700 Sobic010G081700 Sobic004G322300--Sobic010G081700 Sobic004G322300--Sobic006G178100 Sobic008G111600 Sobic008G111600 Sobic004G322300--Sobic008G111600 Sobic004G322300--Sobic002G160700 Sobic003G306400 Sobic003G306400 Sobic004G322300--Sobic003G306400
Octagon: transcription factors


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