Gene annotation
Transcriptome id Sobic.006G106300.2,Sobic.006G106300.1
Synonym Sb06g018920
Functional annotation -
UniProt A0A1B6PLC4 , A0A1B6PLD9
Pfam PF00271 PF12513
Panther DB PTHR12131 PTHR12131:SF1
NCBI CDD -
KEGG Orthology K17675; SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
Gene Ontology GO:0016817; hydrolase activity, acting on acid anhydrides


Orthologs (automatic annotation)
TAIR AT5G39840 : ATP-dependent RNA helicase, mitochondrial, putative
RAP-DB (Rice) LOC_Os04g38630.1 : helicase conserved C-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011126 , Zm00025a056216 , Zm00025a056215 , Zm00025a056213 , Zm00025a056206 , Zm00025a056220
Brachypodium KQJ82970
Barley -
Wheat TraesCS2D02G323600 , TraesCS2D02G323600 , TraesCS2B02G342500 , TraesCS2B02G342500 , TraesCS2A02G339500 , TraesCS2A02G339500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
2 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
3 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
4 Sobic.001G097900 expressed protein -
5 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
6 Sobic.009G254100 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
7 Sobic.002G301100 PQ loop repeat domain containing protein, expressed K09660: mannose-P-dolichol utilization defect 1
8 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
9 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
10 Sobic.008G037700 pentatricopeptide containing protein, putative, expressed -
11 Sobic.004G208500 eukaryotic translation initiation factor 2A, putative, expressed K15026: translation initiation factor 2A
12 Sobic.002G400151 - -
13 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
14 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
15 Sobic.004G254800 heat shock protein DnaJ, putative, expressed K19371: DnaJ homolog subfamily C member 25
16 Sobic.003G304400 NLI interacting factor-like phosphatase, putative, expressed K17496: mitochondrial import inner membrane translocase subunit TIM50
17 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
18 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
19 Sobic.003G397900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed K12667: SWP1, oligosaccharyltransferase complex subunit delta (ribophorin II)
20 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4


Gene co-expression network
sample Sobic006G106300 Sobic006G106300 Sobic003G409900 Sobic003G409900 Sobic006G106300--Sobic003G409900 Sobic003G021600 Sobic003G021600 Sobic006G106300--Sobic003G021600 Sobic002G398700 Sobic002G398700 Sobic006G106300--Sobic002G398700 Sobic001G097900 Sobic001G097900 Sobic006G106300--Sobic001G097900 Sobic001G015400 Sobic001G015400 Sobic006G106300--Sobic001G015400 Sobic009G254100 Sobic009G254100 Sobic006G106300--Sobic009G254100 Sobic002G301100 Sobic002G301100 Sobic006G106300--Sobic002G301100 Sobic001G474400 Sobic001G474400 Sobic006G106300--Sobic001G474400 Sobic002G364900 Sobic002G364900 Sobic006G106300--Sobic002G364900 Sobic003G409900--Sobic006G106300 Sobic001G389200 Sobic001G389200 Sobic003G409900--Sobic001G389200 Sobic006G060000 Sobic006G060000 Sobic003G409900--Sobic006G060000 Sobic009G122500 Sobic009G122500 Sobic003G409900--Sobic009G122500 Sobic003G409900--Sobic003G021600 Sobic010G223400 Sobic010G223400 Sobic003G409900--Sobic010G223400 Sobic004G254800 Sobic004G254800 Sobic003G409900--Sobic004G254800 Sobic003G409900--Sobic001G015400 Sobic009G128500 Sobic009G128500 Sobic003G409900--Sobic009G128500 Sobic009G194000 Sobic009G194000 Sobic003G021600--Sobic009G194000 Sobic003G181700 Sobic003G181700 Sobic003G021600--Sobic003G181700 Sobic003G190200 Sobic003G190200 Sobic003G021600--Sobic003G190200 Sobic002G227500 Sobic002G227500 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic009G040250 Sobic009G040250 Sobic003G021600--Sobic009G040250 Sobic003G394500 Sobic003G394500 Sobic003G021600--Sobic003G394500 Sobic001G308400 Sobic001G308400 Sobic003G021600--Sobic001G308400 Sobic001G043200 Sobic001G043200 Sobic003G021600--Sobic001G043200 Sobic003G304400 Sobic003G304400 Sobic002G398700--Sobic003G304400 Sobic002G398700--Sobic006G106300 Sobic010G091400 Sobic010G091400 Sobic002G398700--Sobic010G091400 Sobic002G398700--Sobic001G015400 Sobic002G150700 Sobic002G150700 Sobic002G398700--Sobic002G150700 Sobic005G026400 Sobic005G026400 Sobic002G398700--Sobic005G026400 Sobic002G408900 Sobic002G408900 Sobic002G398700--Sobic002G408900 Sobic002G386600 Sobic002G386600 Sobic002G398700--Sobic002G386600 Sobic002G398700--Sobic002G364900 Sobic010G192600 Sobic010G192600 Sobic001G097900--Sobic010G192600 Sobic001G097900--Sobic001G474400 Sobic001G445500 Sobic001G445500 Sobic001G097900--Sobic001G445500 Sobic001G097900--Sobic006G106300 Sobic005G110499 Sobic005G110499 Sobic001G097900--Sobic005G110499 Sobic001G097900--Sobic002G227500 Sobic001G097900--Sobic001G308400 Sobic001G097900--Sobic009G040250 Sobic005G114500 Sobic005G114500 Sobic001G097900--Sobic005G114500 Sobic001G099900 Sobic001G099900 Sobic001G015400--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic001G015400--Sobic002G398700 Sobic001G015400--Sobic006G106300 Sobic009G254100--Sobic006G106300 Sobic003G256800 Sobic003G256800 Sobic009G254100--Sobic003G256800 Sobic006G178100 Sobic006G178100 Sobic009G254100--Sobic006G178100 Sobic009G254100--Sobic003G143800 Sobic002G381900 Sobic002G381900 Sobic009G254100--Sobic002G381900 Sobic009G254100--Sobic001G097900 Sobic009G254100--Sobic002G398700 Sobic009G254100--Sobic005G026400 Sobic003G146600 Sobic003G146600 Sobic009G254100--Sobic003G146600 Sobic002G301100--Sobic006G106300 Sobic002G301100--Sobic001G474400 Sobic006G203300 Sobic006G203300 Sobic002G301100--Sobic006G203300 Sobic005G090300 Sobic005G090300 Sobic002G301100--Sobic005G090300 Sobic002G301100--Sobic006G260500 Sobic001G399700 Sobic001G399700 Sobic002G301100--Sobic001G399700 Sobic004G096700 Sobic004G096700 Sobic002G301100--Sobic004G096700 Sobic001G205100 Sobic001G205100 Sobic002G301100--Sobic001G205100 Sobic007G173700 Sobic007G173700 Sobic002G301100--Sobic007G173700 Sobic001G474400--Sobic005G110499 Sobic003G397900 Sobic003G397900 Sobic001G474400--Sobic003G397900 Sobic007G145400 Sobic007G145400 Sobic001G474400--Sobic007G145400 Sobic001G474400--Sobic001G097900 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic001G474400--Sobic010G223400 Sobic001G467100 Sobic001G467100 Sobic001G474400--Sobic001G467100 Sobic006G265600 Sobic006G265600 Sobic001G474400--Sobic006G265600 Sobic002G364900--Sobic003G304400 Sobic002G364900--Sobic010G192600 Sobic002G364900--Sobic006G265600 Sobic002G364900--Sobic001G015400 Sobic002G364900--Sobic002G227500 Sobic002G364900--Sobic006G106300 Sobic002G364900--Sobic001G099900 Sobic001G085800 Sobic001G085800 Sobic002G364900--Sobic001G085800 Sobic002G364900--Sobic001G474400
Octagon: transcription factors


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