Gene annotation
Transcriptome id Sobic.003G021600.2,Sobic.003G021600.1
Synonym Sb03g002030
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt A0A1W0VVG6 , A0A1W0VVG5
Pfam PF00271 PF04408 PF07717 PF00271 PF07717
Panther DB PTHR18934
NCBI CDD -
KEGG Orthology K13117; ATP-dependent RNA helicase DDX35
Gene Ontology GO:0004386; helicase activity


Orthologs (automatic annotation)
TAIR AT4G18465 : RNA helicase family protein
RAP-DB (Rice) LOC_Os01g11370.1 : ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a022931
Brachypodium KQK03276
Barley HORVU3Hr1G028550.19 , HORVU3Hr1G028550.18 , HORVU3Hr1G028550.11 , HORVU3Hr1G028550.10 , HORVU3Hr1G028550.13 , HORVU3Hr1G028550.12 , HORVU3Hr1G028550.15 , HORVU3Hr1G028550.14 , HORVU3Hr1G028550.17 , HORVU3Hr1G028550.16 , HORVU3Hr1G028550.9 , HORVU3Hr1G028550.8 , HORVU3Hr1G028550.5 , HORVU3Hr1G028550.4 , HORVU3Hr1G028550.7 , HORVU3Hr1G028550.6 , HORVU3Hr1G028550.1 , HORVU3Hr1G028550.3 , HORVU3Hr1G028550.2 , HORVU3Hr1G028550.24 , HORVU3Hr1G028550.26 , HORVU3Hr1G028550.27 , HORVU3Hr1G028550.20 , HORVU3Hr1G028550.21 , HORVU3Hr1G028550.33 , HORVU3Hr1G028550.32 , HORVU3Hr1G028550.31 , HORVU3Hr1G028550.30 , HORVU3Hr1G028550.25 , HORVU3Hr1G028550.22 , HORVU3Hr1G028550.23 , HORVU3Hr1G028550.28 , HORVU3Hr1G028550.29
Wheat TraesCS3B02G165500 , TraesCS3D02G148100 , TraesCS3A02G131800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3
2 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
3 Sobic.003G190200 Sec1 family transport protein, putative, expressed -
4 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
5 Sobic.009G040325 - -
6 Sobic.009G040250 - -
7 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
8 Sobic.001G308400 expressed protein -
9 Sobic.001G043200 expressed protein -
10 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
11 Sobic.007G172700 ECT5, putative, expressed -
12 Sobic.009G122500 expressed protein -
13 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
14 Sobic.004G122900 gamma-secretase subunit APH-1B, putative, expressed -
15 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
16 Sobic.009G252300 expressed protein -
17 Sobic.004G193300 phosphatidylinositolglycan class N family protein, expressed K05285: GPI ethanolamine phosphate transferase 1
18 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
19 Sobic.003G393200 expressed protein -
20 Sobic.001G498800 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3


Gene co-expression network
sample Sobic003G021600 Sobic003G021600 Sobic009G194000 Sobic009G194000 Sobic003G021600--Sobic009G194000 Sobic003G181700 Sobic003G181700 Sobic003G021600--Sobic003G181700 Sobic003G190200 Sobic003G190200 Sobic003G021600--Sobic003G190200 Sobic002G227500 Sobic002G227500 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic009G040250 Sobic009G040250 Sobic003G021600--Sobic009G040250 Sobic003G394500 Sobic003G394500 Sobic003G021600--Sobic003G394500 Sobic001G308400 Sobic001G308400 Sobic003G021600--Sobic001G308400 Sobic001G043200 Sobic001G043200 Sobic003G021600--Sobic001G043200 Sobic009G194000--Sobic003G181700 Sobic009G194000--Sobic003G021600 Sobic001G490900 Sobic001G490900 Sobic009G194000--Sobic001G490900 Sobic010G169900 Sobic010G169900 Sobic009G194000--Sobic010G169900 Sobic004G122900 Sobic004G122900 Sobic009G194000--Sobic004G122900 Sobic009G194000--Sobic001G308400 Sobic009G194000--Sobic003G190200 Sobic006G060000 Sobic006G060000 Sobic009G194000--Sobic006G060000 Sobic001G141400 Sobic001G141400 Sobic009G194000--Sobic001G141400 Sobic003G181700--Sobic009G194000 Sobic003G181700--Sobic003G021600 Sobic003G181700--Sobic004G122900 Sobic003G181700--Sobic001G490900 Sobic003G181700--Sobic010G169900 Sobic003G181700--Sobic002G227500 Sobic003G181700--Sobic006G060000 Sobic009G122500 Sobic009G122500 Sobic003G181700--Sobic009G122500 Sobic007G172700 Sobic007G172700 Sobic003G181700--Sobic007G172700 Sobic007G030100 Sobic007G030100 Sobic003G190200--Sobic007G030100 Sobic003G190200--Sobic003G394500 Sobic003G190200--Sobic007G172700 Sobic003G190200--Sobic003G021600 Sobic009G252300 Sobic009G252300 Sobic003G190200--Sobic009G252300 Sobic001G424800 Sobic001G424800 Sobic003G190200--Sobic001G424800 Sobic003G393200 Sobic003G393200 Sobic003G190200--Sobic003G393200 Sobic003G428000 Sobic003G428000 Sobic003G190200--Sobic003G428000 Sobic001G385000 Sobic001G385000 Sobic003G190200--Sobic001G385000 Sobic002G227500--Sobic001G308400 Sobic002G227500--Sobic003G021600 Sobic001G156900 Sobic001G156900 Sobic002G227500--Sobic001G156900 Sobic002G227500--Sobic010G169900 Sobic004G265500 Sobic004G265500 Sobic002G227500--Sobic004G265500 Sobic003G043000 Sobic003G043000 Sobic002G227500--Sobic003G043000 Sobic003G405500 Sobic003G405500 Sobic002G227500--Sobic003G405500 Sobic002G227500--Sobic003G181700 Sobic010G059500 Sobic010G059500 Sobic002G227500--Sobic010G059500 Sobic009G040325--Sobic009G040250 Sobic009G040325--Sobic003G021600 Sobic009G040325--Sobic001G043200 Sobic006G119900 Sobic006G119900 Sobic009G040325--Sobic006G119900 Sobic007G105700 Sobic007G105700 Sobic009G040325--Sobic007G105700 Sobic006G012300 Sobic006G012300 Sobic009G040325--Sobic006G012300 Sobic003G420400 Sobic003G420400 Sobic009G040325--Sobic003G420400 Sobic009G040325--Sobic007G030100 Sobic009G040325--Sobic003G394500 Sobic009G040250--Sobic009G040325 Sobic005G087300 Sobic005G087300 Sobic009G040250--Sobic005G087300 Sobic009G040250--Sobic003G021600 Sobic009G040250--Sobic006G012300 Sobic002G147200 Sobic002G147200 Sobic009G040250--Sobic002G147200 Sobic010G160300 Sobic010G160300 Sobic009G040250--Sobic010G160300 Sobic009G040250--Sobic001G043200 Sobic002G304700 Sobic002G304700 Sobic009G040250--Sobic002G304700 Sobic006G191000 Sobic006G191000 Sobic009G040250--Sobic006G191000 Sobic003G117800 Sobic003G117800 Sobic003G394500--Sobic003G117800 Sobic003G394500--Sobic001G385000 Sobic004G350700 Sobic004G350700 Sobic003G394500--Sobic004G350700 Sobic001G378800 Sobic001G378800 Sobic003G394500--Sobic001G378800 Sobic007G118500 Sobic007G118500 Sobic003G394500--Sobic007G118500 Sobic003G394500--Sobic003G190200 Sobic006G232800 Sobic006G232800 Sobic003G394500--Sobic006G232800 Sobic003G394500--Sobic007G030100 Sobic003G394500--Sobic001G424800 Sobic001G308400--Sobic004G265500 Sobic001G308400--Sobic002G227500 SobicK028600 SobicK028600 Sobic001G308400--SobicK028600 Sobic001G308400--Sobic003G043000 Sobic001G308400--Sobic010G169900 Sobic006G128100 Sobic006G128100 Sobic001G308400--Sobic006G128100 Sobic004G357100 Sobic004G357100 Sobic001G308400--Sobic004G357100 Sobic001G308400--Sobic001G156900 Sobic003G394200 Sobic003G394200 Sobic001G308400--Sobic003G394200 Sobic005G123400 Sobic005G123400 Sobic001G043200--Sobic005G123400 Sobic001G043200--Sobic003G190200 Sobic001G043200--Sobic003G021600 Sobic001G043200--Sobic003G394500 Sobic001G043200--Sobic009G122500 Sobic001G043200--Sobic007G030100 Sobic001G043200--Sobic004G122900 Sobic009G154900 Sobic009G154900 Sobic001G043200--Sobic009G154900 Sobic003G194800 Sobic003G194800 Sobic001G043200--Sobic003G194800
Octagon: transcription factors


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