Gene annotation
Transcriptome id Sobic.004G122900.1
Synonym Sb04g010250
Functional annotation gamma-secretase subunit APH-1B, putative, expressed
UniProt C5XZZ6
Pfam PF06105
Panther DB PTHR12889 PTHR12889:SF0
NCBI CDD KOG3972; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016485; protein processing GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT2G31440 : -
RAP-DB (Rice) LOC_Os02g17280.1 : gamma-secretase subunit APH-1B, putative, expressed
MaizeGDB (Corn) Zm00025a019828
Brachypodium KQJ94357
Barley HORVU3Hr1G104250.4 , HORVU3Hr1G104250.2 , HORVU3Hr1G104250.1 , HORVU3Hr1G104250.5
Wheat TraesCS3B02G571000 , TraesCS3D02G512400 , TraesCS3A02G505100
Populus -


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cDNA sequences
Sobic.004G122900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
2 Sobic.009G122500 expressed protein -
3 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3
4 Sobic.001G156900 single myb histone, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.001G043200 expressed protein -
6 Sobic.001G335000 erlin-2 precursor, putative, expressed -
7 Sobic.001G308400 expressed protein -
8 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
9 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
10 Sobic.002G063900 zinc ion binding protein, putative, expressed -
11 Sobic.002G131400 GPI mannosyltransferase 1, putative, expressed K05284: GPI mannosyltransferase 1 subunit M
12 Sobic.003G190200 Sec1 family transport protein, putative, expressed -
13 Sobic.002G164300 ZOS9-03 - C2H2 zinc finger protein, expressed -
14 Sobic.009G102000 OsFBX9 - F-box domain containing protein, expressed -
15 Sobic.003G398400 expressed protein -
16 Sobic.004G357100 expressed protein -
17 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
18 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
19 Sobic.009G260650 - -
20 Sobic.007G147400 - -


Gene co-expression network
sample Sobic004G122900 Sobic004G122900 Sobic003G181700 Sobic003G181700 Sobic004G122900--Sobic003G181700 Sobic009G122500 Sobic009G122500 Sobic004G122900--Sobic009G122500 Sobic009G194000 Sobic009G194000 Sobic004G122900--Sobic009G194000 Sobic001G156900 Sobic001G156900 Sobic004G122900--Sobic001G156900 Sobic001G043200 Sobic001G043200 Sobic004G122900--Sobic001G043200 Sobic001G335000 Sobic001G335000 Sobic004G122900--Sobic001G335000 Sobic001G308400 Sobic001G308400 Sobic004G122900--Sobic001G308400 Sobic003G021600 Sobic003G021600 Sobic004G122900--Sobic003G021600 Sobic002G227500 Sobic002G227500 Sobic004G122900--Sobic002G227500 Sobic003G181700--Sobic009G194000 Sobic003G181700--Sobic003G021600 Sobic003G181700--Sobic004G122900 Sobic001G490900 Sobic001G490900 Sobic003G181700--Sobic001G490900 Sobic010G169900 Sobic010G169900 Sobic003G181700--Sobic010G169900 Sobic003G181700--Sobic002G227500 Sobic006G060000 Sobic006G060000 Sobic003G181700--Sobic006G060000 Sobic003G181700--Sobic009G122500 Sobic007G172700 Sobic007G172700 Sobic003G181700--Sobic007G172700 Sobic009G122500--Sobic001G335000 Sobic004G060300 Sobic004G060300 Sobic009G122500--Sobic004G060300 Sobic009G122500--Sobic001G156900 Sobic009G122500--Sobic004G122900 Sobic010G223400 Sobic010G223400 Sobic009G122500--Sobic010G223400 Sobic009G122500--Sobic001G308400 Sobic003G394200 Sobic003G394200 Sobic009G122500--Sobic003G394200 Sobic001G389200 Sobic001G389200 Sobic009G122500--Sobic001G389200 Sobic001G118000 Sobic001G118000 Sobic009G122500--Sobic001G118000 Sobic009G194000--Sobic003G181700 Sobic009G194000--Sobic003G021600 Sobic009G194000--Sobic001G490900 Sobic009G194000--Sobic010G169900 Sobic009G194000--Sobic004G122900 Sobic009G194000--Sobic001G308400 Sobic003G190200 Sobic003G190200 Sobic009G194000--Sobic003G190200 Sobic009G194000--Sobic006G060000 Sobic001G141400 Sobic001G141400 Sobic009G194000--Sobic001G141400 Sobic001G156900--Sobic009G122500 Sobic002G119600 Sobic002G119600 Sobic001G156900--Sobic002G119600 Sobic001G156900--Sobic001G308400 Sobic001G156900--Sobic002G227500 Sobic001G156900--Sobic004G122900 Sobic001G156900--Sobic001G335000 Sobic001G156900--Sobic010G169900 Sobic001G156900--Sobic003G181700 Sobic005G110499 Sobic005G110499 Sobic001G156900--Sobic005G110499 Sobic005G123400 Sobic005G123400 Sobic001G043200--Sobic005G123400 Sobic001G043200--Sobic003G190200 Sobic001G043200--Sobic003G021600 Sobic003G394500 Sobic003G394500 Sobic001G043200--Sobic003G394500 Sobic001G043200--Sobic009G122500 Sobic007G030100 Sobic007G030100 Sobic001G043200--Sobic007G030100 Sobic001G043200--Sobic004G122900 Sobic009G154900 Sobic009G154900 Sobic001G043200--Sobic009G154900 Sobic003G194800 Sobic003G194800 Sobic001G043200--Sobic003G194800 Sobic001G335000--Sobic009G122500 Sobic001G335000--Sobic004G060300 Sobic001G335000--Sobic001G156900 Sobic001G335000--Sobic004G122900 Sobic001G012900 Sobic001G012900 Sobic001G335000--Sobic001G012900 Sobic001G335000--Sobic001G043200 Sobic001G193100 Sobic001G193100 Sobic001G335000--Sobic001G193100 Sobic001G335000--Sobic003G181700 Sobic007G118500 Sobic007G118500 Sobic001G335000--Sobic007G118500 Sobic004G265500 Sobic004G265500 Sobic001G308400--Sobic004G265500 Sobic001G308400--Sobic002G227500 SobicK028600 SobicK028600 Sobic001G308400--SobicK028600 Sobic003G043000 Sobic003G043000 Sobic001G308400--Sobic003G043000 Sobic001G308400--Sobic010G169900 Sobic006G128100 Sobic006G128100 Sobic001G308400--Sobic006G128100 Sobic004G357100 Sobic004G357100 Sobic001G308400--Sobic004G357100 Sobic001G308400--Sobic001G156900 Sobic001G308400--Sobic003G394200 Sobic003G021600--Sobic009G194000 Sobic003G021600--Sobic003G181700 Sobic003G021600--Sobic003G190200 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic009G040250 Sobic009G040250 Sobic003G021600--Sobic009G040250 Sobic003G021600--Sobic003G394500 Sobic003G021600--Sobic001G308400 Sobic003G021600--Sobic001G043200 Sobic002G227500--Sobic001G308400 Sobic002G227500--Sobic003G021600 Sobic002G227500--Sobic001G156900 Sobic002G227500--Sobic010G169900 Sobic002G227500--Sobic004G265500 Sobic002G227500--Sobic003G043000 Sobic003G405500 Sobic003G405500 Sobic002G227500--Sobic003G405500 Sobic002G227500--Sobic003G181700 Sobic010G059500 Sobic010G059500 Sobic002G227500--Sobic010G059500
Octagon: transcription factors


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