Gene annotation
Transcriptome id Sobic.003G190200.1
Synonym ATVPS33, VPS33, Sb03g025460
Functional annotation Sec1 family transport protein, putative, expressed
UniProt C5XNN0
Pfam PF00995
Panther DB PTHR11679 PTHR11679:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006904vesicle docking involved in exocytosis


Orthologs (automatic annotation)
TAIR AT3G54860 : Sec1/munc18-like (SM) proteins superfamily
RAP-DB (Rice) LOC_Os04g14654.1 : Sec1 family transport protein, putative, expressed
MaizeGDB (Corn) Zm00025a038360
Brachypodium KQK22122 , KQK23731
Barley HORVU2Hr1G009890.1 , HORVU2Hr1G009890.12 , HORVU2Hr1G009890.10 , HORVU2Hr1G009890.11 , HORVU2Hr1G009890.8 , HORVU2Hr1G009890.2 , HORVU2Hr1G009890.3 , HORVU2Hr1G009890.4 , HORVU2Hr1G009890.5 , HORVU2Hr1G009890.6 , HORVU2Hr1G009890.7 , HORVU2Hr1G009890.9
Wheat TraesCS7B02G227100 , TraesCS2A02G072000 , TraesCS6A02G354200 , TraesCS6A02G354200 , TraesCS6B02G387300 , TraesCS6B02G387300 , TraesCS6B02G387300 , TraesCS7A02G326500 , TraesCS6D02G336500
Populus -


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cDNA sequences
Sobic.003G190200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -
2 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
3 Sobic.007G172700 ECT5, putative, expressed -
4 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
5 Sobic.009G252300 expressed protein -
6 Sobic.001G424800 myosin heavy chain-related, putative, expressed -
7 Sobic.003G393200 expressed protein -
8 Sobic.003G428000 expressed protein -
9 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
10 Sobic.001G043200 expressed protein -
11 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
12 Sobic.002G147200 esterase/lipase/thioesterase, putative, expressed -
13 Sobic.001G149000 FAR1 family protein, expressed -
14 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
15 Sobic.004G350700 kelch repeat protein, putative, expressed -
16 Sobic.005G123400 expressed protein -
17 Sobic.001G411900 TBC domain containing protein, expressed -
18 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3
19 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
20 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -


Gene co-expression network
sample Sobic003G190200 Sobic003G190200 Sobic007G030100 Sobic007G030100 Sobic003G190200--Sobic007G030100 Sobic003G394500 Sobic003G394500 Sobic003G190200--Sobic003G394500 Sobic007G172700 Sobic007G172700 Sobic003G190200--Sobic007G172700 Sobic003G021600 Sobic003G021600 Sobic003G190200--Sobic003G021600 Sobic009G252300 Sobic009G252300 Sobic003G190200--Sobic009G252300 Sobic001G424800 Sobic001G424800 Sobic003G190200--Sobic001G424800 Sobic003G393200 Sobic003G393200 Sobic003G190200--Sobic003G393200 Sobic003G428000 Sobic003G428000 Sobic003G190200--Sobic003G428000 Sobic001G385000 Sobic001G385000 Sobic003G190200--Sobic001G385000 Sobic007G030100--Sobic003G190200 Sobic002G147200 Sobic002G147200 Sobic007G030100--Sobic002G147200 Sobic007G030100--Sobic003G394500 Sobic003G117800 Sobic003G117800 Sobic007G030100--Sobic003G117800 Sobic007G030100--Sobic001G385000 Sobic007G030100--Sobic007G172700 Sobic007G030100--Sobic001G424800 Sobic006G232800 Sobic006G232800 Sobic007G030100--Sobic006G232800 Sobic007G030100--Sobic003G428000 Sobic003G394500--Sobic003G117800 Sobic003G394500--Sobic001G385000 Sobic004G350700 Sobic004G350700 Sobic003G394500--Sobic004G350700 Sobic001G378800 Sobic001G378800 Sobic003G394500--Sobic001G378800 Sobic007G118500 Sobic007G118500 Sobic003G394500--Sobic007G118500 Sobic003G394500--Sobic003G190200 Sobic003G394500--Sobic006G232800 Sobic003G394500--Sobic007G030100 Sobic003G394500--Sobic001G424800 Sobic006G060000 Sobic006G060000 Sobic007G172700--Sobic006G060000 Sobic007G172700--Sobic004G350700 Sobic008G152700 Sobic008G152700 Sobic007G172700--Sobic008G152700 Sobic007G172700--Sobic003G190200 Sobic007G172700--Sobic003G394500 Sobic003G058500 Sobic003G058500 Sobic007G172700--Sobic003G058500 Sobic002G355800 Sobic002G355800 Sobic007G172700--Sobic002G355800 Sobic007G172700--Sobic001G424800 Sobic007G172700--Sobic007G030100 Sobic009G194000 Sobic009G194000 Sobic003G021600--Sobic009G194000 Sobic003G181700 Sobic003G181700 Sobic003G021600--Sobic003G181700 Sobic003G021600--Sobic003G190200 Sobic002G227500 Sobic002G227500 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic009G040250 Sobic009G040250 Sobic003G021600--Sobic009G040250 Sobic003G021600--Sobic003G394500 Sobic001G308400 Sobic001G308400 Sobic003G021600--Sobic001G308400 Sobic001G043200 Sobic001G043200 Sobic003G021600--Sobic001G043200 Sobic009G252300--Sobic003G428000 Sobic009G252300--Sobic003G190200 Sobic001G149000 Sobic001G149000 Sobic009G252300--Sobic001G149000 Sobic001G141400 Sobic001G141400 Sobic009G252300--Sobic001G141400 Sobic005G123400 Sobic005G123400 Sobic009G252300--Sobic005G123400 Sobic009G252300--Sobic003G117800 Sobic010G134650 Sobic010G134650 Sobic009G252300--Sobic010G134650 Sobic007G192400 Sobic007G192400 Sobic009G252300--Sobic007G192400 Sobic009G252300--Sobic008G152700 Sobic001G424800--Sobic003G117800 Sobic001G424800--Sobic003G058500 Sobic001G424800--Sobic004G350700 Sobic001G356200 Sobic001G356200 Sobic001G424800--Sobic001G356200 Sobic001G424800--Sobic001G149000 Sobic001G280500 Sobic001G280500 Sobic001G424800--Sobic001G280500 Sobic001G424800--Sobic003G394500 Sobic003G385300 Sobic003G385300 Sobic001G424800--Sobic003G385300 Sobic001G424800--Sobic001G378800 Sobic003G393200--Sobic003G190200 Sobic003G393200--Sobic005G123400 Sobic001G051400 Sobic001G051400 Sobic003G393200--Sobic001G051400 Sobic006G237500 Sobic006G237500 Sobic003G393200--Sobic006G237500 Sobic002G066800 Sobic002G066800 Sobic003G393200--Sobic002G066800 Sobic005G087300 Sobic005G087300 Sobic003G393200--Sobic005G087300 Sobic003G393200--Sobic001G043200 Sobic001G343000 Sobic001G343000 Sobic003G393200--Sobic001G343000 Sobic009G059400 Sobic009G059400 Sobic003G393200--Sobic009G059400 Sobic003G428000--Sobic001G149000 Sobic009G046900 Sobic009G046900 Sobic003G428000--Sobic009G046900 Sobic004G194400 Sobic004G194400 Sobic003G428000--Sobic004G194400 Sobic003G428000--Sobic008G152700 Sobic010G274800 Sobic010G274800 Sobic003G428000--Sobic010G274800 Sobic003G428000--Sobic009G252300 Sobic003G428000--Sobic003G385300 Sobic004G082800 Sobic004G082800 Sobic003G428000--Sobic004G082800 Sobic002G074800 Sobic002G074800 Sobic003G428000--Sobic002G074800 Sobic010G086300 Sobic010G086300 Sobic001G385000--Sobic010G086300 Sobic001G385000--Sobic003G394500 Sobic001G385000--Sobic006G232800 Sobic001G385000--Sobic001G149000 Sobic001G385000--Sobic003G117800 Sobic001G385000--Sobic001G356200 Sobic001G385000--Sobic008G152700 Sobic001G385000--Sobic001G424800 Sobic001G308500 Sobic001G308500 Sobic001G385000--Sobic001G308500
Octagon: transcription factors


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