Gene annotation
Transcriptome id Sobic.003G117800.1
Synonym Sb03g009930
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt A0A1W0VWX6
Pfam PF00642
Panther DB PTHR12506 PTHR12506:SF27
NCBI CDD KOG1677; CCCH-type Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G47850 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os01g15460.2 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a035306 , Zm00025a023963 , Zm00025a023968 , Zm00025a035312
Brachypodium PNT70304 , PNT70302 , PNT70303 , PNT70301 , KQK03691 , KQK03690 , KQK03693 , KQK03692 , KQK03695 , KQK03694 , KQK03696
Barley HORVU3Hr1G035750.9 , HORVU3Hr1G035750.8 , HORVU3Hr1G035750.5 , HORVU3Hr1G035750.4 , HORVU3Hr1G035750.7 , HORVU3Hr1G035750.6 , HORVU3Hr1G035750.3 , HORVU3Hr1G035750.2 , HORVU3Hr1G035750.1
Wheat TraesCS3D02G182200 , TraesCS3D02G182200 , TraesCS3D02G182200 , TraesCS3B02G206400 , TraesCS3B02G206400 , TraesCS3A02G178700 , TraesCS3A02G178700 , TraesCS3A02G178700
Populus -


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cDNA sequences
Sobic.003G117800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G424800 myosin heavy chain-related, putative, expressed -
2 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
3 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
4 Sobic.001G057400 expressed protein -
5 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
6 Sobic.001G149000 FAR1 family protein, expressed -
7 Sobic.001G356200 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
8 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
9 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
10 Sobic.005G185500 - -
11 Sobic.004G350700 kelch repeat protein, putative, expressed -
12 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
13 Sobic.007G039200 MYB family transcription factor, putative, expressed -
14 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
15 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
16 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
17 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -
18 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -
19 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
20 Sobic.002G233600 glycogen operon protein glgX, putative, expressed K01214: ISA, isoamylase


Gene co-expression network
sample Sobic003G117800 Sobic003G117800 Sobic001G424800 Sobic001G424800 Sobic003G117800--Sobic001G424800 Sobic003G385300 Sobic003G385300 Sobic003G117800--Sobic003G385300 Sobic003G394500 Sobic003G394500 Sobic003G117800--Sobic003G394500 Sobic001G057400 Sobic001G057400 Sobic003G117800--Sobic001G057400 Sobic008G152700 Sobic008G152700 Sobic003G117800--Sobic008G152700 Sobic001G149000 Sobic001G149000 Sobic003G117800--Sobic001G149000 Sobic001G356200 Sobic001G356200 Sobic003G117800--Sobic001G356200 Sobic001G385000 Sobic001G385000 Sobic003G117800--Sobic001G385000 Sobic009G046900 Sobic009G046900 Sobic003G117800--Sobic009G046900 Sobic001G424800--Sobic003G117800 Sobic003G058500 Sobic003G058500 Sobic001G424800--Sobic003G058500 Sobic004G350700 Sobic004G350700 Sobic001G424800--Sobic004G350700 Sobic001G424800--Sobic001G356200 Sobic001G424800--Sobic001G149000 Sobic001G280500 Sobic001G280500 Sobic001G424800--Sobic001G280500 Sobic001G424800--Sobic003G394500 Sobic001G424800--Sobic003G385300 Sobic001G378800 Sobic001G378800 Sobic001G424800--Sobic001G378800 Sobic003G385300--Sobic001G149000 Sobic003G402800 Sobic003G402800 Sobic003G385300--Sobic003G402800 Sobic004G077300 Sobic004G077300 Sobic003G385300--Sobic004G077300 Sobic004G064200 Sobic004G064200 Sobic003G385300--Sobic004G064200 Sobic004G176200 Sobic004G176200 Sobic003G385300--Sobic004G176200 Sobic001G257800 Sobic001G257800 Sobic003G385300--Sobic001G257800 Sobic005G225500 Sobic005G225500 Sobic003G385300--Sobic005G225500 Sobic007G039200 Sobic007G039200 Sobic003G385300--Sobic007G039200 Sobic002G074800 Sobic002G074800 Sobic003G385300--Sobic002G074800 Sobic003G394500--Sobic003G117800 Sobic003G394500--Sobic001G385000 Sobic003G394500--Sobic004G350700 Sobic003G394500--Sobic001G378800 Sobic007G118500 Sobic007G118500 Sobic003G394500--Sobic007G118500 Sobic003G190200 Sobic003G190200 Sobic003G394500--Sobic003G190200 Sobic006G232800 Sobic006G232800 Sobic003G394500--Sobic006G232800 Sobic007G030100 Sobic007G030100 Sobic003G394500--Sobic007G030100 Sobic003G394500--Sobic001G424800 Sobic001G057400--Sobic003G117800 Sobic007G077532 Sobic007G077532 Sobic001G057400--Sobic007G077532 Sobic005G185500 Sobic005G185500 Sobic001G057400--Sobic005G185500 Sobic003G353700 Sobic003G353700 Sobic001G057400--Sobic003G353700 Sobic003G428000 Sobic003G428000 Sobic001G057400--Sobic003G428000 Sobic010G255900 Sobic010G255900 Sobic001G057400--Sobic010G255900 Sobic007G142600 Sobic007G142600 Sobic001G057400--Sobic007G142600 Sobic001G057400--Sobic003G385300 Sobic008G055500 Sobic008G055500 Sobic001G057400--Sobic008G055500 Sobic008G152700--Sobic001G149000 Sobic008G152700--Sobic003G385300 Sobic008G152700--Sobic003G117800 Sobic008G152700--Sobic004G077300 Sobic008G152700--Sobic009G046900 Sobic007G172700 Sobic007G172700 Sobic008G152700--Sobic007G172700 Sobic008G152700--Sobic003G428000 Sobic008G152700--Sobic003G394500 Sobic008G152700--Sobic001G385000 Sobic001G149000--Sobic004G077300 Sobic001G149000--Sobic008G152700 Sobic001G149000--Sobic003G385300 Sobic001G149000--Sobic009G046900 Sobic001G384200 Sobic001G384200 Sobic001G149000--Sobic001G384200 Sobic009G178400 Sobic009G178400 Sobic001G149000--Sobic009G178400 Sobic001G149000--Sobic001G280500 Sobic008G166100 Sobic008G166100 Sobic001G149000--Sobic008G166100 Sobic001G387300 Sobic001G387300 Sobic001G149000--Sobic001G387300 Sobic004G113600 Sobic004G113600 Sobic001G356200--Sobic004G113600 Sobic001G400000 Sobic001G400000 Sobic001G356200--Sobic001G400000 Sobic001G356200--Sobic003G385300 Sobic001G356200--Sobic007G039200 Sobic001G356200--Sobic001G424800 Sobic004G107100 Sobic004G107100 Sobic001G356200--Sobic004G107100 Sobic003G089100 Sobic003G089100 Sobic001G356200--Sobic003G089100 Sobic001G356200--Sobic003G117800 Sobic006G134500 Sobic006G134500 Sobic001G356200--Sobic006G134500 Sobic010G086300 Sobic010G086300 Sobic001G385000--Sobic010G086300 Sobic001G385000--Sobic003G394500 Sobic001G385000--Sobic006G232800 Sobic001G385000--Sobic001G149000 Sobic001G385000--Sobic003G117800 Sobic001G385000--Sobic001G356200 Sobic001G385000--Sobic008G152700 Sobic001G385000--Sobic001G424800 Sobic001G308500 Sobic001G308500 Sobic001G385000--Sobic001G308500 Sobic009G046900--Sobic001G149000 Sobic009G046900--Sobic009G178400 Sobic002G233600 Sobic002G233600 Sobic009G046900--Sobic002G233600 Sobic009G046900--Sobic006G134500 Sobic009G046900--Sobic002G074800 Sobic009G046900--Sobic003G385300 Sobic009G046900--Sobic001G384200 Sobic006G193400 Sobic006G193400 Sobic009G046900--Sobic006G193400 Sobic003G358600 Sobic003G358600 Sobic009G046900--Sobic003G358600
Octagon: transcription factors


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