Gene annotation
Transcriptome id Sobic.001G057400.1
Synonym Sb01g005220
Functional annotation expressed protein
UniProt C5WX75
Pfam PF03735
Panther DB PTHR31917 PTHR31917:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G20030 : Plant Tudor-like RNA-binding protein
RAP-DB (Rice) LOC_Os03g58190.1 : expressed protein
MaizeGDB (Corn) Zm00025a016576 , Zm00025a008560
Brachypodium PNT73973 , KQK12709 , KQK12708 , KQK12710
Barley HORVU5Hr1G105880.1 , HORVU5Hr1G105880.9 , HORVU5Hr1G105880.11 , HORVU5Hr1G105880.10
Wheat TraesCS5D02G446200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
2 Sobic.007G077532 - K08597: SENP8, NEDP1, sentrin-specific protease 8
3 Sobic.005G185500 - -
4 Sobic.003G353700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
5 Sobic.003G428000 expressed protein -
6 Sobic.010G255900 DNL zinc finger domain containing protein, putative, expressed K17808: ZIM17, DNLZ, mitochondrial protein import protein ZIM17
7 Sobic.007G142600 DUF593 domain containing protein, expressed -
8 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
9 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
10 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
11 Sobic.009G252300 expressed protein -
12 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
13 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
14 Sobic.001G149000 FAR1 family protein, expressed -
15 Sobic.003G250400 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.001G424800 myosin heavy chain-related, putative, expressed -
17 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
18 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
19 Sobic.008G036600 expressed protein -
20 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit


Gene co-expression network
sample Sobic001G057400 Sobic001G057400 Sobic003G117800 Sobic003G117800 Sobic001G057400--Sobic003G117800 Sobic007G077532 Sobic007G077532 Sobic001G057400--Sobic007G077532 Sobic005G185500 Sobic005G185500 Sobic001G057400--Sobic005G185500 Sobic003G353700 Sobic003G353700 Sobic001G057400--Sobic003G353700 Sobic003G428000 Sobic003G428000 Sobic001G057400--Sobic003G428000 Sobic010G255900 Sobic010G255900 Sobic001G057400--Sobic010G255900 Sobic007G142600 Sobic007G142600 Sobic001G057400--Sobic007G142600 Sobic003G385300 Sobic003G385300 Sobic001G057400--Sobic003G385300 Sobic008G055500 Sobic008G055500 Sobic001G057400--Sobic008G055500 Sobic001G424800 Sobic001G424800 Sobic003G117800--Sobic001G424800 Sobic003G117800--Sobic003G385300 Sobic003G394500 Sobic003G394500 Sobic003G117800--Sobic003G394500 Sobic003G117800--Sobic001G057400 Sobic008G152700 Sobic008G152700 Sobic003G117800--Sobic008G152700 Sobic001G149000 Sobic001G149000 Sobic003G117800--Sobic001G149000 Sobic001G356200 Sobic001G356200 Sobic003G117800--Sobic001G356200 Sobic001G385000 Sobic001G385000 Sobic003G117800--Sobic001G385000 Sobic009G046900 Sobic009G046900 Sobic003G117800--Sobic009G046900 Sobic004G141400 Sobic004G141400 Sobic007G077532--Sobic004G141400 Sobic007G077532--Sobic001G057400 Sobic007G192400 Sobic007G192400 Sobic007G077532--Sobic007G192400 Sobic004G004100 Sobic004G004100 Sobic007G077532--Sobic004G004100 Sobic007G077532--Sobic005G185500 Sobic010G181600 Sobic010G181600 Sobic007G077532--Sobic010G181600 Sobic007G077532--Sobic003G353700 Sobic008G006000 Sobic008G006000 Sobic007G077532--Sobic008G006000 Sobic007G077532--Sobic003G117800 Sobic002G389600 Sobic002G389600 Sobic005G185500--Sobic002G389600 Sobic005G185500--Sobic003G385300 Sobic006G093600 Sobic006G093600 Sobic005G185500--Sobic006G093600 Sobic007G039200 Sobic007G039200 Sobic005G185500--Sobic007G039200 Sobic006G001100 Sobic006G001100 Sobic005G185500--Sobic006G001100 Sobic005G225500 Sobic005G225500 Sobic005G185500--Sobic005G225500 Sobic002G102300 Sobic002G102300 Sobic005G185500--Sobic002G102300 Sobic006G162500 Sobic006G162500 Sobic005G185500--Sobic006G162500 Sobic003G402800 Sobic003G402800 Sobic005G185500--Sobic003G402800 Sobic003G353700--Sobic007G192400 Sobic008G036600 Sobic008G036600 Sobic003G353700--Sobic008G036600 Sobic005G063200 Sobic005G063200 Sobic003G353700--Sobic005G063200 Sobic001G024400 Sobic001G024400 Sobic003G353700--Sobic001G024400 Sobic003G353700--Sobic007G039200 Sobic003G353700--Sobic010G181600 Sobic003G236000 Sobic003G236000 Sobic003G353700--Sobic003G236000 Sobic004G074600 Sobic004G074600 Sobic003G353700--Sobic004G074600 Sobic003G353700--Sobic008G006000 Sobic003G428000--Sobic001G149000 Sobic003G428000--Sobic009G046900 Sobic004G194400 Sobic004G194400 Sobic003G428000--Sobic004G194400 Sobic003G428000--Sobic008G152700 Sobic010G274800 Sobic010G274800 Sobic003G428000--Sobic010G274800 Sobic009G252300 Sobic009G252300 Sobic003G428000--Sobic009G252300 Sobic003G428000--Sobic003G385300 Sobic004G082800 Sobic004G082800 Sobic003G428000--Sobic004G082800 Sobic002G074800 Sobic002G074800 Sobic003G428000--Sobic002G074800 Sobic010G255900--Sobic005G185500 Sobic006G162400 Sobic006G162400 Sobic010G255900--Sobic006G162400 Sobic010G255900--Sobic001G356200 Sobic010G255900--Sobic003G385300 Sobic001G504500 Sobic001G504500 Sobic010G255900--Sobic001G504500 Sobic010G255900--Sobic001G149000 Sobic010G255900--Sobic003G117800 Sobic010G255900--Sobic003G353700 Sobic010G255900--Sobic003G428000 Sobic007G142600--Sobic003G236000 Sobic007G142600--Sobic003G385300 Sobic007G142600--Sobic005G225500 Sobic003G024100 Sobic003G024100 Sobic007G142600--Sobic003G024100 Sobic009G201000 Sobic009G201000 Sobic007G142600--Sobic009G201000 Sobic004G303000 Sobic004G303000 Sobic007G142600--Sobic004G303000 Sobic009G113500 Sobic009G113500 Sobic007G142600--Sobic009G113500 Sobic009G106700 Sobic009G106700 Sobic007G142600--Sobic009G106700 Sobic007G142600--Sobic007G039200 Sobic003G385300--Sobic001G149000 Sobic003G385300--Sobic003G402800 Sobic004G077300 Sobic004G077300 Sobic003G385300--Sobic004G077300 Sobic004G064200 Sobic004G064200 Sobic003G385300--Sobic004G064200 Sobic004G176200 Sobic004G176200 Sobic003G385300--Sobic004G176200 Sobic001G257800 Sobic001G257800 Sobic003G385300--Sobic001G257800 Sobic003G385300--Sobic005G225500 Sobic003G385300--Sobic007G039200 Sobic003G385300--Sobic002G074800 Sobic008G055500--Sobic003G402800 Sobic006G060000 Sobic006G060000 Sobic008G055500--Sobic006G060000 Sobic004G350700 Sobic004G350700 Sobic008G055500--Sobic004G350700 Sobic008G055500--Sobic003G385300 Sobic008G055500--Sobic003G117800 Sobic008G055500--Sobic001G257800 Sobic008G055500--Sobic008G152700 Sobic008G055500--Sobic004G176200 Sobic001G501900 Sobic001G501900 Sobic008G055500--Sobic001G501900
Octagon: transcription factors


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