Gene annotation
Transcriptome id Sobic.003G428000.1
Synonym Sb03g046010
Functional annotation expressed protein
UniProt A0A1B6Q892
Pfam PF00646 PF00271 PF07496 PF00176
Panther DB PTHR10799 PTHR10799:SF573
NCBI CDD KOG1001; Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0008270zinc ion binding GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT3G54460 : SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
RAP-DB (Rice) LOC_Os01g72310.1 : OsFBO7 - F-box and other domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025965 , Zm00025a025977
Brachypodium KQK11493
Barley HORVU3Hr1G107920.4 , HORVU3Hr1G107920.5 , HORVU3Hr1G107920.6 , HORVU3Hr1G107920.7 , HORVU3Hr1G107920.1 , HORVU3Hr1G107920.2 , HORVU3Hr1G107920.3 , HORVU3Hr1G107920.8 , HORVU3Hr1G107920.9
Wheat TraesCS3D02G490000 , TraesCS3B02G543900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G149000 FAR1 family protein, expressed -
2 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
3 Sobic.004G194400 expressed protein -
4 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
5 Sobic.010G274800 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
6 Sobic.009G252300 expressed protein -
7 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
8 Sobic.004G082800 GRAM and C2 domains containing protein, putative, expressed -
9 Sobic.002G074800 - -
10 Sobic.006G071362 - K02021: putative ABC transport system ATP-binding protein
11 Sobic.006G134500 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
12 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
13 Sobic.003G190200 Sec1 family transport protein, putative, expressed -
14 Sobic.009G156800 expressed protein -
15 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
16 Sobic.002G233600 glycogen operon protein glgX, putative, expressed K01214: ISA, isoamylase
17 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
18 Sobic.009G178400 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
19 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -
20 Sobic.008G069300 - -


Gene co-expression network
sample Sobic003G428000 Sobic003G428000 Sobic001G149000 Sobic001G149000 Sobic003G428000--Sobic001G149000 Sobic009G046900 Sobic009G046900 Sobic003G428000--Sobic009G046900 Sobic004G194400 Sobic004G194400 Sobic003G428000--Sobic004G194400 Sobic008G152700 Sobic008G152700 Sobic003G428000--Sobic008G152700 Sobic010G274800 Sobic010G274800 Sobic003G428000--Sobic010G274800 Sobic009G252300 Sobic009G252300 Sobic003G428000--Sobic009G252300 Sobic003G385300 Sobic003G385300 Sobic003G428000--Sobic003G385300 Sobic004G082800 Sobic004G082800 Sobic003G428000--Sobic004G082800 Sobic002G074800 Sobic002G074800 Sobic003G428000--Sobic002G074800 Sobic004G077300 Sobic004G077300 Sobic001G149000--Sobic004G077300 Sobic001G149000--Sobic008G152700 Sobic001G149000--Sobic003G385300 Sobic001G149000--Sobic009G046900 Sobic001G384200 Sobic001G384200 Sobic001G149000--Sobic001G384200 Sobic009G178400 Sobic009G178400 Sobic001G149000--Sobic009G178400 Sobic001G280500 Sobic001G280500 Sobic001G149000--Sobic001G280500 Sobic008G166100 Sobic008G166100 Sobic001G149000--Sobic008G166100 Sobic001G387300 Sobic001G387300 Sobic001G149000--Sobic001G387300 Sobic009G046900--Sobic001G149000 Sobic009G046900--Sobic009G178400 Sobic002G233600 Sobic002G233600 Sobic009G046900--Sobic002G233600 Sobic006G134500 Sobic006G134500 Sobic009G046900--Sobic006G134500 Sobic009G046900--Sobic002G074800 Sobic009G046900--Sobic003G385300 Sobic009G046900--Sobic001G384200 Sobic006G193400 Sobic006G193400 Sobic009G046900--Sobic006G193400 Sobic003G358600 Sobic003G358600 Sobic009G046900--Sobic003G358600 Sobic006G071362 Sobic006G071362 Sobic004G194400--Sobic006G071362 Sobic004G194400--Sobic006G134500 Sobic006G265800 Sobic006G265800 Sobic004G194400--Sobic006G265800 Sobic004G194400--Sobic003G428000 Sobic010G277700 Sobic010G277700 Sobic004G194400--Sobic010G277700 Sobic001G308500 Sobic001G308500 Sobic004G194400--Sobic001G308500 Sobic004G194400--Sobic001G149000 Sobic004G194400--Sobic003G385300 Sobic004G194400--Sobic010G274800 Sobic008G152700--Sobic001G149000 Sobic008G152700--Sobic003G385300 Sobic003G117800 Sobic003G117800 Sobic008G152700--Sobic003G117800 Sobic008G152700--Sobic004G077300 Sobic008G152700--Sobic009G046900 Sobic007G172700 Sobic007G172700 Sobic008G152700--Sobic007G172700 Sobic008G152700--Sobic003G428000 Sobic003G394500 Sobic003G394500 Sobic008G152700--Sobic003G394500 Sobic001G385000 Sobic001G385000 Sobic008G152700--Sobic001G385000 Sobic010G274800--Sobic001G308500 Sobic010G274800--Sobic009G046900 Sobic010G274800--Sobic001G149000 Sobic010G274800--Sobic003G428000 Sobic010G274800--Sobic004G194400 Sobic010G274800--Sobic006G265800 Sobic010G274800--Sobic006G071362 Sobic010G086300 Sobic010G086300 Sobic010G274800--Sobic010G086300 Sobic010G274800--Sobic006G134500 Sobic009G252300--Sobic003G428000 Sobic003G190200 Sobic003G190200 Sobic009G252300--Sobic003G190200 Sobic009G252300--Sobic001G149000 Sobic001G141400 Sobic001G141400 Sobic009G252300--Sobic001G141400 Sobic005G123400 Sobic005G123400 Sobic009G252300--Sobic005G123400 Sobic009G252300--Sobic003G117800 Sobic010G134650 Sobic010G134650 Sobic009G252300--Sobic010G134650 Sobic007G192400 Sobic007G192400 Sobic009G252300--Sobic007G192400 Sobic009G252300--Sobic008G152700 Sobic003G385300--Sobic001G149000 Sobic003G402800 Sobic003G402800 Sobic003G385300--Sobic003G402800 Sobic003G385300--Sobic004G077300 Sobic004G064200 Sobic004G064200 Sobic003G385300--Sobic004G064200 Sobic004G176200 Sobic004G176200 Sobic003G385300--Sobic004G176200 Sobic001G257800 Sobic001G257800 Sobic003G385300--Sobic001G257800 Sobic005G225500 Sobic005G225500 Sobic003G385300--Sobic005G225500 Sobic007G039200 Sobic007G039200 Sobic003G385300--Sobic007G039200 Sobic003G385300--Sobic002G074800 Sobic006G117700 Sobic006G117700 Sobic004G082800--Sobic006G117700 Sobic010G024400 Sobic010G024400 Sobic004G082800--Sobic010G024400 Sobic010G202200 Sobic010G202200 Sobic004G082800--Sobic010G202200 Sobic010G130601 Sobic010G130601 Sobic004G082800--Sobic010G130601 Sobic005G110424 Sobic005G110424 Sobic004G082800--Sobic005G110424 Sobic009G230800 Sobic009G230800 Sobic004G082800--Sobic009G230800 Sobic001G024400 Sobic001G024400 Sobic004G082800--Sobic001G024400 Sobic004G082800--Sobic004G064200 Sobic001G519600 Sobic001G519600 Sobic004G082800--Sobic001G519600 Sobic002G074800--Sobic004G064200 Sobic006G001100 Sobic006G001100 Sobic002G074800--Sobic006G001100 Sobic006G204400 Sobic006G204400 Sobic002G074800--Sobic006G204400 Sobic008G136601 Sobic008G136601 Sobic002G074800--Sobic008G136601 Sobic010G114200 Sobic010G114200 Sobic002G074800--Sobic010G114200 Sobic006G143900 Sobic006G143900 Sobic002G074800--Sobic006G143900 Sobic004G228300 Sobic004G228300 Sobic002G074800--Sobic004G228300 Sobic005G048500 Sobic005G048500 Sobic002G074800--Sobic005G048500 Sobic008G136700 Sobic008G136700 Sobic002G074800--Sobic008G136700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.