Gene annotation
Transcriptome id Sobic.006G134500.1,Sobic.006G134500.2
Synonym Sb06g021420
Functional annotation calcium-binding mitochondrial protein anon-60Da, putative, expressed
UniProt A0A1Z5RDQ5 , C5YBG5
Pfam PF07766
Panther DB PTHR14009 PTHR14009:SF12
NCBI CDD KOG1043; Ca2+-binding transmembrane protein LETM1/MRS7
KEGG Orthology K17800; LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65540 : LETM1-like protein
RAP-DB (Rice) LOC_Os04g41950.1 : calcium-binding mitochondrial protein anon-60Da, putative, expressed
MaizeGDB (Corn) Zm00025a021226 , Zm00025a010812 , Zm00025a037228
Brachypodium KQK06415 , KQJ83373 , KQK00271 , KQK00272
Barley HORVU2Hr1G085780.30 , HORVU2Hr1G085780.31 , HORVU2Hr1G085780.32 , HORVU2Hr1G085780.33 , HORVU2Hr1G085780.8 , HORVU2Hr1G085780.9 , HORVU2Hr1G085780.1 , HORVU2Hr1G085780.2 , HORVU2Hr1G085780.3 , HORVU2Hr1G085780.4 , HORVU2Hr1G085780.5 , HORVU2Hr1G085780.6 , HORVU2Hr1G085780.7 , HORVU1Hr1G062470.2 , HORVU1Hr1G062470.3 , HORVU1Hr1G062470.1 , HORVU1Hr1G062470.6 , HORVU1Hr1G062470.7 , HORVU1Hr1G062470.4 , HORVU1Hr1G062470.5 , HORVU1Hr1G062470.8 , HORVU1Hr1G062470.9 , HORVU2Hr1G085780.12 , HORVU2Hr1G085780.13 , HORVU2Hr1G085780.10 , HORVU2Hr1G085780.11 , HORVU2Hr1G085780.16 , HORVU2Hr1G085780.17 , HORVU2Hr1G085780.14 , HORVU2Hr1G085780.15 , HORVU2Hr1G085780.18 , HORVU2Hr1G085780.19 , HORVU6Hr1G055750.6 , HORVU6Hr1G055750.7 , HORVU6Hr1G055750.4 , HORVU6Hr1G055750.1 , HORVU6Hr1G055750.8 , HORVU2Hr1G085780.25 , HORVU2Hr1G085780.29 , HORVU2Hr1G085780.28 , HORVU2Hr1G085780.23 , HORVU2Hr1G085780.22 , HORVU2Hr1G085780.21 , HORVU2Hr1G085780.20 , HORVU2Hr1G085780.27 , HORVU2Hr1G085780.26 , HORVU2Hr1G085780.24
Wheat TraesCS1A02G248400 , TraesCS2D02G351100 , TraesCS2A02G353000 , TraesCS6A02G218100 , TraesCS6B02G247500 , TraesCS1A02G248400 , TraesCS2B02G370900 , TraesCS1D02G247800 , TraesCS6D02G200200 , TraesCS1B02G259000
Populus PNT17195


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G265800 OsFBX154 - F-box domain containing protein, expressed -
2 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
3 Sobic.003G024100 MRH1, putative, expressed -
4 Sobic.004G194400 expressed protein -
5 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
6 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
7 Sobic.001G340800 exocyst complex component 6, putative, expressed -
8 Sobic.003G175350 - -
9 Sobic.006G071362 - K02021: putative ABC transport system ATP-binding protein
10 Sobic.002G414800 PPR repeat domain containing protein, putative, expressed -
11 Sobic.003G244400 OsFBK1 - F-box domain and kelch repeat containing protein, expressed -
12 Sobic.002G213900 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
13 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -
14 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
15 Sobic.008G166100 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
16 Sobic.007G039200 MYB family transcription factor, putative, expressed -
17 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
18 Sobic.001G370400 aberrant pollen transmission 1, putative, expressed -
19 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
20 Sobic.002G389600 transcription regulator, putative, expressed -


Gene co-expression network
sample Sobic006G134500 Sobic006G134500 Sobic006G265800 Sobic006G265800 Sobic006G134500--Sobic006G265800 Sobic001G384200 Sobic001G384200 Sobic006G134500--Sobic001G384200 Sobic003G024100 Sobic003G024100 Sobic006G134500--Sobic003G024100 Sobic004G194400 Sobic004G194400 Sobic006G134500--Sobic004G194400 Sobic001G400000 Sobic001G400000 Sobic006G134500--Sobic001G400000 Sobic004G113600 Sobic004G113600 Sobic006G134500--Sobic004G113600 Sobic001G340800 Sobic001G340800 Sobic006G134500--Sobic001G340800 Sobic003G175350 Sobic003G175350 Sobic006G134500--Sobic003G175350 Sobic006G071362 Sobic006G071362 Sobic006G134500--Sobic006G071362 Sobic006G265800--Sobic001G384200 Sobic006G265800--Sobic006G134500 Sobic006G265800--Sobic001G400000 Sobic009G163100 Sobic009G163100 Sobic006G265800--Sobic009G163100 Sobic009G201000 Sobic009G201000 Sobic006G265800--Sobic009G201000 Sobic006G265800--Sobic003G024100 Sobic008G156600 Sobic008G156600 Sobic006G265800--Sobic008G156600 Sobic003G244400 Sobic003G244400 Sobic006G265800--Sobic003G244400 Sobic008G007600 Sobic008G007600 Sobic006G265800--Sobic008G007600 Sobic001G384200--Sobic003G024100 Sobic001G384200--Sobic001G340800 Sobic008G166100 Sobic008G166100 Sobic001G384200--Sobic008G166100 Sobic009G178400 Sobic009G178400 Sobic001G384200--Sobic009G178400 Sobic001G370400 Sobic001G370400 Sobic001G384200--Sobic001G370400 Sobic001G384200--Sobic003G244400 Sobic001G432200 Sobic001G432200 Sobic001G384200--Sobic001G432200 Sobic001G384200--Sobic003G175350 Sobic007G039200 Sobic007G039200 Sobic001G384200--Sobic007G039200 Sobic003G024100--Sobic001G340800 Sobic003G024100--Sobic001G384200 Sobic003G024100--Sobic001G370400 Sobic009G061500 Sobic009G061500 Sobic003G024100--Sobic009G061500 Sobic008G136601 Sobic008G136601 Sobic003G024100--Sobic008G136601 Sobic006G001100 Sobic006G001100 Sobic003G024100--Sobic006G001100 Sobic007G091400 Sobic007G091400 Sobic003G024100--Sobic007G091400 Sobic010G003200 Sobic010G003200 Sobic003G024100--Sobic010G003200 Sobic009G061601 Sobic009G061601 Sobic003G024100--Sobic009G061601 Sobic004G194400--Sobic006G071362 Sobic004G194400--Sobic006G134500 Sobic004G194400--Sobic006G265800 Sobic003G428000 Sobic003G428000 Sobic004G194400--Sobic003G428000 Sobic010G277700 Sobic010G277700 Sobic004G194400--Sobic010G277700 Sobic001G308500 Sobic001G308500 Sobic004G194400--Sobic001G308500 Sobic001G149000 Sobic001G149000 Sobic004G194400--Sobic001G149000 Sobic003G385300 Sobic003G385300 Sobic004G194400--Sobic003G385300 Sobic010G274800 Sobic010G274800 Sobic004G194400--Sobic010G274800 Sobic001G400000--Sobic004G113600 Sobic001G112600 Sobic001G112600 Sobic001G400000--Sobic001G112600 Sobic001G400000--Sobic001G384200 Sobic005G050400 Sobic005G050400 Sobic001G400000--Sobic005G050400 Sobic001G400000--Sobic003G244400 Sobic001G400000--Sobic006G265800 Sobic004G007400 Sobic004G007400 Sobic001G400000--Sobic004G007400 Sobic008G055600 Sobic008G055600 Sobic001G400000--Sobic008G055600 Sobic001G400000--Sobic008G156600 Sobic004G113600--Sobic001G112600 Sobic004G113600--Sobic003G244400 Sobic004G358000 Sobic004G358000 Sobic004G113600--Sobic004G358000 Sobic009G242200 Sobic009G242200 Sobic004G113600--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic004G113600--Sobic002G170100 Sobic004G113600--Sobic005G050400 Sobic004G113600--Sobic001G384200 Sobic004G113600--Sobic001G400000 Sobic005G054150 Sobic005G054150 Sobic004G113600--Sobic005G054150 Sobic001G340800--Sobic001G370400 Sobic001G340800--Sobic009G061601 Sobic001G340800--Sobic008G136601 Sobic004G290600 Sobic004G290600 Sobic001G340800--Sobic004G290600 Sobic001G340800--Sobic009G061500 Sobic008G020800 Sobic008G020800 Sobic001G340800--Sobic008G020800 Sobic001G294500 Sobic001G294500 Sobic001G340800--Sobic001G294500 Sobic007G131000 Sobic007G131000 Sobic001G340800--Sobic007G131000 Sobic003G093100 Sobic003G093100 Sobic001G340800--Sobic003G093100 Sobic003G175350--Sobic001G340800 Sobic008G071800 Sobic008G071800 Sobic003G175350--Sobic008G071800 Sobic003G175350--Sobic001G384200 Sobic002G364700 Sobic002G364700 Sobic003G175350--Sobic002G364700 Sobic002G099700 Sobic002G099700 Sobic003G175350--Sobic002G099700 Sobic003G175350--Sobic001G370400 Sobic002G101600 Sobic002G101600 Sobic003G175350--Sobic002G101600 Sobic001G136000 Sobic001G136000 Sobic003G175350--Sobic001G136000 Sobic003G175350--Sobic009G061500 Sobic006G071362--Sobic004G194400 Sobic003G358600 Sobic003G358600 Sobic006G071362--Sobic003G358600 Sobic006G071362--Sobic001G340800 Sobic006G071362--Sobic006G134500 Sobic006G117700 Sobic006G117700 Sobic006G071362--Sobic006G117700 Sobic002G233600 Sobic002G233600 Sobic006G071362--Sobic002G233600 Sobic010G134650 Sobic010G134650 Sobic006G071362--Sobic010G134650 Sobic006G071362--Sobic003G024100 Sobic006G071362--Sobic006G265800
Octagon: transcription factors


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