Gene annotation
Transcriptome id Sobic.004G113600.1,Sobic.004G113600.3,Sobic.004G113600.2
Synonym Sb04g009260
Functional annotation protein phosphatase 2C, putative, expressed
UniProt A0A1Z5RLV4 , A0A1Z5RLW2 , C5XZF4
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF338
NCBI CDD KOG0699; Serine/threonine protein phosphatase KOG0698Serine/threonine protein phosphatase
KEGG Orthology K17506; PPM1L, protein phosphatase 1L
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT5G53140 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os02g15594.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a034427 , Zm00025a019937
Brachypodium KQJ94271 , PNT75824 , PNT75823 , PNT75825 , KQK18083
Barley HORVU6Hr1G050710.5 , HORVU6Hr1G050710.4 , HORVU6Hr1G050710.7 , HORVU6Hr1G050710.6 , HORVU6Hr1G050710.1 , HORVU6Hr1G050710.3 , HORVU6Hr1G050710.2
Wheat TraesCS6D02G188300 , TraesCS6D02G188300 , TraesCS6B02G224900 , TraesCS6B02G224900 , TraesCS6B02G224900 , TraesCS6A02G202800 , TraesCS6A02G202800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
2 Sobic.003G244400 OsFBK1 - F-box domain and kelch repeat containing protein, expressed -
3 Sobic.004G358000 CAMK_CAMK_like.16 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
4 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
5 Sobic.002G170100 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
6 Sobic.005G050400 syntaxin 6, putative, expressed -
7 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
8 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
9 Sobic.005G054150 - -
10 Sobic.003G024100 MRH1, putative, expressed -
11 Sobic.002G389600 transcription regulator, putative, expressed -
12 Sobic.001G370400 aberrant pollen transmission 1, putative, expressed -
13 Sobic.001G103100 DNA binding protein, putative, expressed -
14 Sobic.001G387300 exostosin family domain containing protein, expressed -
15 Sobic.003G441000 rhoGAP domain containing protein, expressed -
16 Sobic.007G091400 diacylglycerol kinase catalytic domain family protein, expressed K00901: dgkA, diacylglycerol kinase (ATP)
17 Sobic.001G279000 OsFBX382 - F-box domain containing protein, expressed -
18 Sobic.001G340800 exocyst complex component 6, putative, expressed -
19 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
20 Sobic.010G003200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -


Gene co-expression network
sample Sobic004G113600 Sobic004G113600 Sobic001G112600 Sobic001G112600 Sobic004G113600--Sobic001G112600 Sobic003G244400 Sobic003G244400 Sobic004G113600--Sobic003G244400 Sobic004G358000 Sobic004G358000 Sobic004G113600--Sobic004G358000 Sobic009G242200 Sobic009G242200 Sobic004G113600--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic004G113600--Sobic002G170100 Sobic005G050400 Sobic005G050400 Sobic004G113600--Sobic005G050400 Sobic001G384200 Sobic001G384200 Sobic004G113600--Sobic001G384200 Sobic001G400000 Sobic001G400000 Sobic004G113600--Sobic001G400000 Sobic005G054150 Sobic005G054150 Sobic004G113600--Sobic005G054150 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic003G441000 Sobic003G441000 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic001G112600--Sobic004G358000 Sobic005G144000 Sobic005G144000 Sobic001G112600--Sobic005G144000 Sobic001G370400 Sobic001G370400 Sobic003G244400--Sobic001G370400 Sobic001G103100 Sobic001G103100 Sobic003G244400--Sobic001G103100 Sobic003G244400--Sobic008G055200 Sobic001G432200 Sobic001G432200 Sobic003G244400--Sobic001G432200 Sobic006G204500 Sobic006G204500 Sobic003G244400--Sobic006G204500 Sobic001G340800 Sobic001G340800 Sobic003G244400--Sobic001G340800 Sobic002G364700 Sobic002G364700 Sobic003G244400--Sobic002G364700 Sobic007G091400 Sobic007G091400 Sobic003G244400--Sobic007G091400 Sobic010G003200 Sobic010G003200 Sobic003G244400--Sobic010G003200 Sobic004G358000--Sobic002G170100 Sobic004G358000--Sobic007G091400 Sobic004G358000--Sobic001G103100 Sobic004G358000--Sobic009G242200 Sobic003G290500 Sobic003G290500 Sobic004G358000--Sobic003G290500 Sobic003G218100 Sobic003G218100 Sobic004G358000--Sobic003G218100 Sobic003G304600 Sobic003G304600 Sobic004G358000--Sobic003G304600 Sobic002G380300 Sobic002G380300 Sobic004G358000--Sobic002G380300 Sobic008G176500 Sobic008G176500 Sobic004G358000--Sobic008G176500 Sobic009G242200--Sobic002G170100 Sobic009G242200--Sobic003G290500 Sobic009G242200--Sobic002G380300 Sobic006G115700 Sobic006G115700 Sobic009G242200--Sobic006G115700 Sobic009G242200--Sobic003G304600 Sobic009G242200--Sobic004G358000 Sobic009G242200--Sobic007G091400 Sobic003G297100 Sobic003G297100 Sobic009G242200--Sobic003G297100 Sobic009G242200--Sobic001G370400 Sobic002G170100--Sobic009G242200 Sobic002G170100--Sobic002G380300 Sobic005G170400 Sobic005G170400 Sobic002G170100--Sobic005G170400 Sobic002G170100--Sobic004G358000 Sobic002G170100--Sobic003G218100 Sobic002G170100--Sobic003G290500 Sobic002G170100--Sobic003G304600 Sobic002G170100--Sobic005G144000 Sobic002G283200 Sobic002G283200 Sobic002G170100--Sobic002G283200 Sobic005G050400--Sobic001G112600 Sobic001G072000 Sobic001G072000 Sobic005G050400--Sobic001G072000 Sobic008G156600 Sobic008G156600 Sobic005G050400--Sobic008G156600 Sobic005G050400--Sobic009G242200 Sobic005G050400--Sobic002G170100 Sobic005G050400--Sobic003G441000 Sobic004G007400 Sobic004G007400 Sobic005G050400--Sobic004G007400 Sobic005G050400--Sobic005G144000 Sobic009G163100 Sobic009G163100 Sobic005G050400--Sobic009G163100 Sobic003G024100 Sobic003G024100 Sobic001G384200--Sobic003G024100 Sobic001G384200--Sobic001G340800 Sobic008G166100 Sobic008G166100 Sobic001G384200--Sobic008G166100 Sobic009G178400 Sobic009G178400 Sobic001G384200--Sobic009G178400 Sobic001G384200--Sobic001G370400 Sobic001G384200--Sobic003G244400 Sobic001G384200--Sobic001G432200 Sobic003G175350 Sobic003G175350 Sobic001G384200--Sobic003G175350 Sobic007G039200 Sobic007G039200 Sobic001G384200--Sobic007G039200 Sobic001G400000--Sobic004G113600 Sobic001G400000--Sobic001G112600 Sobic001G400000--Sobic001G384200 Sobic001G400000--Sobic005G050400 Sobic001G400000--Sobic003G244400 Sobic006G265800 Sobic006G265800 Sobic001G400000--Sobic006G265800 Sobic001G400000--Sobic004G007400 Sobic008G055600 Sobic008G055600 Sobic001G400000--Sobic008G055600 Sobic001G400000--Sobic008G156600 Sobic005G054150--Sobic002G170100 Sobic005G054150--Sobic009G242200 Sobic005G054150--Sobic007G091400 Sobic010G274100 Sobic010G274100 Sobic005G054150--Sobic010G274100 Sobic005G054150--Sobic004G358000 Sobic006G095700 Sobic006G095700 Sobic005G054150--Sobic006G095700 Sobic003G042800 Sobic003G042800 Sobic005G054150--Sobic003G042800 Sobic001G254000 Sobic001G254000 Sobic005G054150--Sobic001G254000 Sobic003G013900 Sobic003G013900 Sobic005G054150--Sobic003G013900
Octagon: transcription factors


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