Gene annotation
Transcriptome id Sobic.005G050400.1
Synonym ATSYP61, SYP61, Sb05g004120, OSM1
Functional annotation syntaxin 6, putative, expressed
UniProt C5Y5J2
Pfam PF05739 PF09177
Panther DB PTHR19957 PTHR19957:SF111
NCBI CDD KOG3202; SNARE protein TLG1/Syntaxin 6
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT1G28490 : syntaxin of plants 61
RAP-DB (Rice) LOC_Os11g06740.1 : syntaxin 6, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ89278
Barley HORVU4Hr1G019940.1 , HORVU4Hr1G019940.2
Wheat TraesCS4B02G111700 , TraesCS4D02G109300 , TraesCS4A02G208100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
2 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
3 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
4 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
5 Sobic.002G170100 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
6 Sobic.003G441000 rhoGAP domain containing protein, expressed -
7 Sobic.004G007400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
8 Sobic.005G144000 glycosyltransferase, putative, expressed -
9 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
10 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
11 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
12 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
13 Sobic.003G244400 OsFBK1 - F-box domain and kelch repeat containing protein, expressed -
14 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
15 Sobic.002G381500 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
16 Sobic.006G204500 pectinacetylesterase domain containing protein, expressed -
17 Sobic.004G358000 CAMK_CAMK_like.16 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
18 Sobic.001G503600 expressed protein -
19 Sobic.001G039100 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
20 Sobic.008G055200 dirigent, putative, expressed -


Gene co-expression network
sample Sobic005G050400 Sobic005G050400 Sobic001G112600 Sobic001G112600 Sobic005G050400--Sobic001G112600 Sobic001G072000 Sobic001G072000 Sobic005G050400--Sobic001G072000 Sobic008G156600 Sobic008G156600 Sobic005G050400--Sobic008G156600 Sobic009G242200 Sobic009G242200 Sobic005G050400--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic005G050400--Sobic002G170100 Sobic003G441000 Sobic003G441000 Sobic005G050400--Sobic003G441000 Sobic004G007400 Sobic004G007400 Sobic005G050400--Sobic004G007400 Sobic005G144000 Sobic005G144000 Sobic005G050400--Sobic005G144000 Sobic009G163100 Sobic009G163100 Sobic005G050400--Sobic009G163100 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic003G244400 Sobic003G244400 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic004G358000 Sobic004G358000 Sobic001G112600--Sobic004G358000 Sobic001G112600--Sobic005G144000 Sobic001G322400 Sobic001G322400 Sobic001G072000--Sobic001G322400 Sobic001G072000--Sobic005G050400 Sobic001G072000--Sobic001G112600 Sobic004G279200 Sobic004G279200 Sobic001G072000--Sobic004G279200 Sobic001G072000--Sobic008G156600 Sobic001G432200 Sobic001G432200 Sobic001G072000--Sobic001G432200 Sobic001G072000--Sobic009G163100 Sobic001G072000--Sobic009G242200 Sobic004G038500 Sobic004G038500 Sobic001G072000--Sobic004G038500 Sobic008G156600--Sobic009G163100 Sobic008G156600--Sobic005G050400 Sobic008G156600--Sobic001G072000 Sobic008G156600--Sobic001G112600 Sobic005G020600 Sobic005G020600 Sobic008G156600--Sobic005G020600 Sobic008G171900 Sobic008G171900 Sobic008G156600--Sobic008G171900 Sobic004G241300 Sobic004G241300 Sobic008G156600--Sobic004G241300 Sobic008G156600--Sobic004G007400 Sobic008G156600--Sobic001G322400 Sobic009G242200--Sobic002G170100 Sobic003G290500 Sobic003G290500 Sobic009G242200--Sobic003G290500 Sobic002G380300 Sobic002G380300 Sobic009G242200--Sobic002G380300 Sobic006G115700 Sobic006G115700 Sobic009G242200--Sobic006G115700 Sobic003G304600 Sobic003G304600 Sobic009G242200--Sobic003G304600 Sobic009G242200--Sobic004G358000 Sobic007G091400 Sobic007G091400 Sobic009G242200--Sobic007G091400 Sobic003G297100 Sobic003G297100 Sobic009G242200--Sobic003G297100 Sobic001G370400 Sobic001G370400 Sobic009G242200--Sobic001G370400 Sobic002G170100--Sobic009G242200 Sobic002G170100--Sobic002G380300 Sobic005G170400 Sobic005G170400 Sobic002G170100--Sobic005G170400 Sobic002G170100--Sobic004G358000 Sobic003G218100 Sobic003G218100 Sobic002G170100--Sobic003G218100 Sobic002G170100--Sobic003G290500 Sobic002G170100--Sobic003G304600 Sobic002G170100--Sobic005G144000 Sobic002G283200 Sobic002G283200 Sobic002G170100--Sobic002G283200 Sobic003G441000--Sobic005G144000 Sobic003G441000--Sobic001G112600 Sobic003G441000--Sobic002G170100 Sobic003G441000--Sobic009G242200 Sobic001G279000 Sobic001G279000 Sobic003G441000--Sobic001G279000 Sobic003G441000--Sobic004G358000 Sobic003G441000--Sobic003G290500 Sobic003G441000--Sobic008G055200 Sobic003G441000--Sobic005G170400 Sobic004G007400--Sobic005G050400 Sobic004G007400--Sobic001G112600 Sobic009G087100 Sobic009G087100 Sobic004G007400--Sobic009G087100 Sobic004G007400--Sobic008G156600 Sobic002G176000 Sobic002G176000 Sobic004G007400--Sobic002G176000 Sobic004G007400--Sobic003G441000 Sobic004G007400--Sobic004G358000 Sobic004G046800 Sobic004G046800 Sobic004G007400--Sobic004G046800 Sobic002G364700 Sobic002G364700 Sobic004G007400--Sobic002G364700 Sobic005G144000--Sobic003G441000 Sobic005G144000--Sobic002G170100 Sobic008G122800 Sobic008G122800 Sobic005G144000--Sobic008G122800 Sobic005G144000--Sobic001G279000 Sobic005G144000--Sobic009G242200 Sobic001G503600 Sobic001G503600 Sobic005G144000--Sobic001G503600 Sobic004G180100 Sobic004G180100 Sobic005G144000--Sobic004G180100 Sobic008G071300 Sobic008G071300 Sobic005G144000--Sobic008G071300 Sobic002G404600 Sobic002G404600 Sobic005G144000--Sobic002G404600 Sobic009G163100--Sobic008G156600 Sobic009G163100--Sobic005G020600 Sobic009G163100--Sobic008G171900 Sobic009G163100--Sobic001G072000 Sobic002G299500 Sobic002G299500 Sobic009G163100--Sobic002G299500 Sobic009G163100--Sobic005G050400 Sobic001G435700 Sobic001G435700 Sobic009G163100--Sobic001G435700 Sobic009G163100--Sobic001G112600 Sobic009G163100--Sobic001G322400
Octagon: transcription factors


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