Gene annotation
Transcriptome id Sobic.008G156600.1
Synonym Sb08g020560, FBL17
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt A0A1Z5R7V7
Pfam PF00646
Panther DB PTHR24006
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G54650 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os12g40860.1 : Leucine Rich Repeat family protein, expressed
MaizeGDB (Corn) Zm00025a004596 , Zm00025a007352 , Zm00025a025286
Brachypodium PNT74405 , PNT74406 , KQK14092 , KQK14091 , KQK14090 , KQK14088 , KQK14089 , KQK14084 , KQK14085 , KQK14086 , KQK14087
Barley HORVU5Hr1G014320.19 , HORVU5Hr1G014320.18 , HORVU5Hr1G014320.16 , HORVU5Hr1G014320.15 , HORVU5Hr1G014320.14 , HORVU5Hr1G014320.13 , HORVU5Hr1G014320.12 , HORVU5Hr1G014320.11 , HORVU5Hr1G014320.10 , HORVU5Hr1G014320.20 , HORVU5Hr1G014320.7 , HORVU5Hr1G014320.6 , HORVU5Hr1G014320.5 , HORVU5Hr1G014320.4 , HORVU5Hr1G014320.3 , HORVU5Hr1G014320.2 , HORVU5Hr1G014320.1 , HORVU5Hr1G014320.9 , HORVU5Hr1G014320.8
Wheat TraesCS5B02G058300 , TraesCS5D02G069500 , TraesCS5A02G058400 , TraesCS5A02G058400 , TraesCS5A02G058400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
2 Sobic.005G050400 syntaxin 6, putative, expressed -
3 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
4 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
5 Sobic.005G020600 Mad3/BUB1 homology region 1 domain containing protein, expressed -
6 Sobic.008G171900 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
7 Sobic.004G241300 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
8 Sobic.004G007400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
9 Sobic.001G322400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
10 Sobic.002G299500 expressed protein -
11 Sobic.001G435700 HVA22, putative, expressed K17338: receptor expression-enhancing protein 1/2/3/4
12 Sobic.002G172401 - K07904: Ras-related protein Rab-11A
13 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
14 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
15 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
16 Sobic.004G062200 expressed protein -
17 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
18 Sobic.001G432200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
19 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
20 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81


Gene co-expression network
sample Sobic008G156600 Sobic008G156600 Sobic009G163100 Sobic009G163100 Sobic008G156600--Sobic009G163100 Sobic005G050400 Sobic005G050400 Sobic008G156600--Sobic005G050400 Sobic001G072000 Sobic001G072000 Sobic008G156600--Sobic001G072000 Sobic001G112600 Sobic001G112600 Sobic008G156600--Sobic001G112600 Sobic005G020600 Sobic005G020600 Sobic008G156600--Sobic005G020600 Sobic008G171900 Sobic008G171900 Sobic008G156600--Sobic008G171900 Sobic004G241300 Sobic004G241300 Sobic008G156600--Sobic004G241300 Sobic004G007400 Sobic004G007400 Sobic008G156600--Sobic004G007400 Sobic001G322400 Sobic001G322400 Sobic008G156600--Sobic001G322400 Sobic009G163100--Sobic008G156600 Sobic009G163100--Sobic005G020600 Sobic009G163100--Sobic008G171900 Sobic009G163100--Sobic001G072000 Sobic002G299500 Sobic002G299500 Sobic009G163100--Sobic002G299500 Sobic009G163100--Sobic005G050400 Sobic001G435700 Sobic001G435700 Sobic009G163100--Sobic001G435700 Sobic009G163100--Sobic001G112600 Sobic009G163100--Sobic001G322400 Sobic005G050400--Sobic001G112600 Sobic005G050400--Sobic001G072000 Sobic005G050400--Sobic008G156600 Sobic009G242200 Sobic009G242200 Sobic005G050400--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic005G050400--Sobic002G170100 Sobic003G441000 Sobic003G441000 Sobic005G050400--Sobic003G441000 Sobic005G050400--Sobic004G007400 Sobic005G144000 Sobic005G144000 Sobic005G050400--Sobic005G144000 Sobic005G050400--Sobic009G163100 Sobic001G072000--Sobic001G322400 Sobic001G072000--Sobic005G050400 Sobic001G072000--Sobic001G112600 Sobic004G279200 Sobic004G279200 Sobic001G072000--Sobic004G279200 Sobic001G072000--Sobic008G156600 Sobic001G432200 Sobic001G432200 Sobic001G072000--Sobic001G432200 Sobic001G072000--Sobic009G163100 Sobic001G072000--Sobic009G242200 Sobic004G038500 Sobic004G038500 Sobic001G072000--Sobic004G038500 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic003G244400 Sobic003G244400 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic004G358000 Sobic004G358000 Sobic001G112600--Sobic004G358000 Sobic001G112600--Sobic005G144000 Sobic005G020600--Sobic009G163100 Sobic005G020600--Sobic002G299500 Sobic005G020600--Sobic008G156600 Sobic005G020600--Sobic001G072000 Sobic009G202000 Sobic009G202000 Sobic005G020600--Sobic009G202000 Sobic005G020600--Sobic008G171900 Sobic005G020600--Sobic001G432200 Sobic005G020600--Sobic001G322400 Sobic005G020600--Sobic001G112600 Sobic008G171900--Sobic002G299500 Sobic008G171900--Sobic009G163100 Sobic008G171900--Sobic004G241300 Sobic008G171900--Sobic001G435700 Sobic008G171900--Sobic008G156600 Sobic008G171900--Sobic005G020600 Sobic003G376900 Sobic003G376900 Sobic008G171900--Sobic003G376900 Sobic008G007600 Sobic008G007600 Sobic008G171900--Sobic008G007600 Sobic001G385300 Sobic001G385300 Sobic008G171900--Sobic001G385300 Sobic004G241300--Sobic008G171900 Sobic004G241300--Sobic008G156600 Sobic004G241300--Sobic009G163100 Sobic003G423700 Sobic003G423700 Sobic004G241300--Sobic003G423700 Sobic004G241300--Sobic001G435700 Sobic004G241300--Sobic005G020600 Sobic002G420100 Sobic002G420100 Sobic004G241300--Sobic002G420100 Sobic010G253200 Sobic010G253200 Sobic004G241300--Sobic010G253200 Sobic002G172401 Sobic002G172401 Sobic004G241300--Sobic002G172401 Sobic004G007400--Sobic005G050400 Sobic004G007400--Sobic001G112600 Sobic009G087100 Sobic009G087100 Sobic004G007400--Sobic009G087100 Sobic004G007400--Sobic008G156600 Sobic002G176000 Sobic002G176000 Sobic004G007400--Sobic002G176000 Sobic004G007400--Sobic003G441000 Sobic004G007400--Sobic004G358000 Sobic004G046800 Sobic004G046800 Sobic004G007400--Sobic004G046800 Sobic002G364700 Sobic002G364700 Sobic004G007400--Sobic002G364700 Sobic001G322400--Sobic001G072000 Sobic010G073900 Sobic010G073900 Sobic001G322400--Sobic010G073900 Sobic001G322400--Sobic001G432200 Sobic008G166100 Sobic008G166100 Sobic001G322400--Sobic008G166100 Sobic001G322400--Sobic004G279200 Sobic007G048101 Sobic007G048101 Sobic001G322400--Sobic007G048101 Sobic001G322400--Sobic009G202000 Sobic009G238650 Sobic009G238650 Sobic001G322400--Sobic009G238650 Sobic003G407700 Sobic003G407700 Sobic001G322400--Sobic003G407700
Octagon: transcription factors


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