Gene annotation
Transcriptome id Sobic.005G020600.1,Sobic.005G020600.2,Sobic.005G020600.3
Synonym Sb05g001750
Functional annotation Mad3/BUB1 homology region 1 domain containing protein, expressed
UniProt C5Y3Y5 , A0A1Z5RH76
Pfam PF08311
Panther DB PTHR14030 PTHR14030:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007094; mitotic spindle assembly checkpoint


Orthologs (automatic annotation)
TAIR AT5G05510 : Mad3/BUB1 homology region 1
RAP-DB (Rice) LOC_Os12g03180.1 : Mad3/BUB1 homology region 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053734
Brachypodium KQJ92480
Barley HORVU5Hr1G045460.2 , HORVU5Hr1G045460.3 , HORVU5Hr1G045460.1 , HORVU5Hr1G045460.4 , HORVU7Hr1G029580.1 , HORVU7Hr1G029580.3 , HORVU7Hr1G029580.2 , HORVU7Hr1G029580.4
Wheat TraesCS5B02G141100 , TraesCSU02G188700 , TraesCS5D02G149700 , TraesCS5A02G142400 , TraesCS5B02G141100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
2 Sobic.002G299500 expressed protein -
3 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
4 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
5 Sobic.009G202000 GATA zinc finger domain containing protein, expressed -
6 Sobic.008G171900 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
7 Sobic.001G432200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
8 Sobic.001G322400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
9 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
10 Sobic.005G050400 syntaxin 6, putative, expressed -
11 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
12 Sobic.006G115700 WRKY35, expressed K18835: WRKY transcription factor 2
13 Sobic.003G244400 OsFBK1 - F-box domain and kelch repeat containing protein, expressed -
14 Sobic.006G171600 ZOS4-10 - C2H2 zinc finger protein, expressed -
15 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
16 Sobic.010G003200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
17 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
18 Sobic.003G376900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed -
19 Sobic.002G172401 - K07904: Ras-related protein Rab-11A
20 Sobic.004G093100 protein kinase family protein, putative, expressed -


Gene co-expression network
sample Sobic005G020600 Sobic005G020600 Sobic009G163100 Sobic009G163100 Sobic005G020600--Sobic009G163100 Sobic002G299500 Sobic002G299500 Sobic005G020600--Sobic002G299500 Sobic008G156600 Sobic008G156600 Sobic005G020600--Sobic008G156600 Sobic001G072000 Sobic001G072000 Sobic005G020600--Sobic001G072000 Sobic009G202000 Sobic009G202000 Sobic005G020600--Sobic009G202000 Sobic008G171900 Sobic008G171900 Sobic005G020600--Sobic008G171900 Sobic001G432200 Sobic001G432200 Sobic005G020600--Sobic001G432200 Sobic001G322400 Sobic001G322400 Sobic005G020600--Sobic001G322400 Sobic001G112600 Sobic001G112600 Sobic005G020600--Sobic001G112600 Sobic009G163100--Sobic008G156600 Sobic009G163100--Sobic005G020600 Sobic009G163100--Sobic008G171900 Sobic009G163100--Sobic001G072000 Sobic009G163100--Sobic002G299500 Sobic005G050400 Sobic005G050400 Sobic009G163100--Sobic005G050400 Sobic001G435700 Sobic001G435700 Sobic009G163100--Sobic001G435700 Sobic009G163100--Sobic001G112600 Sobic009G163100--Sobic001G322400 Sobic002G299500--Sobic008G171900 Sobic003G376900 Sobic003G376900 Sobic002G299500--Sobic003G376900 Sobic002G299500--Sobic009G163100 Sobic002G299500--Sobic005G020600 Sobic008G007600 Sobic008G007600 Sobic002G299500--Sobic008G007600 Sobic003G352900 Sobic003G352900 Sobic002G299500--Sobic003G352900 Sobic004G250800 Sobic004G250800 Sobic002G299500--Sobic004G250800 Sobic002G299500--Sobic009G202000 Sobic002G299500--Sobic001G072000 Sobic008G156600--Sobic009G163100 Sobic008G156600--Sobic005G050400 Sobic008G156600--Sobic001G072000 Sobic008G156600--Sobic001G112600 Sobic008G156600--Sobic005G020600 Sobic008G156600--Sobic008G171900 Sobic004G241300 Sobic004G241300 Sobic008G156600--Sobic004G241300 Sobic004G007400 Sobic004G007400 Sobic008G156600--Sobic004G007400 Sobic008G156600--Sobic001G322400 Sobic001G072000--Sobic001G322400 Sobic001G072000--Sobic005G050400 Sobic001G072000--Sobic001G112600 Sobic004G279200 Sobic004G279200 Sobic001G072000--Sobic004G279200 Sobic001G072000--Sobic008G156600 Sobic001G072000--Sobic001G432200 Sobic001G072000--Sobic009G163100 Sobic009G242200 Sobic009G242200 Sobic001G072000--Sobic009G242200 Sobic004G038500 Sobic004G038500 Sobic001G072000--Sobic004G038500 Sobic009G202000--Sobic001G432200 Sobic004G290600 Sobic004G290600 Sobic009G202000--Sobic004G290600 Sobic010G142650 Sobic010G142650 Sobic009G202000--Sobic010G142650 Sobic002G088600 Sobic002G088600 Sobic009G202000--Sobic002G088600 Sobic003G093100 Sobic003G093100 Sobic009G202000--Sobic003G093100 Sobic010G003200 Sobic010G003200 Sobic009G202000--Sobic010G003200 Sobic001G370400 Sobic001G370400 Sobic009G202000--Sobic001G370400 Sobic006G171600 Sobic006G171600 Sobic009G202000--Sobic006G171600 Sobic004G177900 Sobic004G177900 Sobic009G202000--Sobic004G177900 Sobic008G171900--Sobic002G299500 Sobic008G171900--Sobic009G163100 Sobic008G171900--Sobic004G241300 Sobic008G171900--Sobic001G435700 Sobic008G171900--Sobic008G156600 Sobic008G171900--Sobic005G020600 Sobic008G171900--Sobic003G376900 Sobic008G171900--Sobic008G007600 Sobic001G385300 Sobic001G385300 Sobic008G171900--Sobic001G385300 Sobic001G432200--Sobic003G093100 Sobic001G432200--Sobic001G370400 Sobic003G297100 Sobic003G297100 Sobic001G432200--Sobic003G297100 Sobic009G061601 Sobic009G061601 Sobic001G432200--Sobic009G061601 Sobic003G151400 Sobic003G151400 Sobic001G432200--Sobic003G151400 Sobic001G432200--Sobic002G088600 Sobic001G432200--Sobic004G290600 Sobic006G204500 Sobic006G204500 Sobic001G432200--Sobic006G204500 Sobic001G294500 Sobic001G294500 Sobic001G432200--Sobic001G294500 Sobic001G322400--Sobic001G072000 Sobic010G073900 Sobic010G073900 Sobic001G322400--Sobic010G073900 Sobic001G322400--Sobic001G432200 Sobic008G166100 Sobic008G166100 Sobic001G322400--Sobic008G166100 Sobic001G322400--Sobic004G279200 Sobic007G048101 Sobic007G048101 Sobic001G322400--Sobic007G048101 Sobic001G322400--Sobic009G202000 Sobic009G238650 Sobic009G238650 Sobic001G322400--Sobic009G238650 Sobic003G407700 Sobic003G407700 Sobic001G322400--Sobic003G407700 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic003G441000 Sobic003G441000 Sobic001G112600--Sobic003G441000 Sobic002G170100 Sobic002G170100 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic003G244400 Sobic003G244400 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic004G358000 Sobic004G358000 Sobic001G112600--Sobic004G358000 Sobic005G144000 Sobic005G144000 Sobic001G112600--Sobic005G144000
Octagon: transcription factors


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