Gene annotation
Transcriptome id Sobic.001G322400.1,Sobic.001G322400.2
Synonym ADF6, Sb01g031270, ATADF6
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
actin-depolymerizing factor, putative, expressed
UniProt C5WUM6 , A0A1B6QM99
Pfam PF00241
Panther DB PTHR11913 PTHR11913:SF25
NCBI CDD KOG1735; Actin depolymerizing factor
KEGG Orthology K05765; cofilin
Gene Ontology GO:0005622; intracellular GO:0003779actin binding GO:0015629actin cytoskeleton


Orthologs (automatic annotation)
TAIR AT2G31200 : actin depolymerizing factor 6
RAP-DB (Rice) LOC_Os10g37670.1 : actin-depolymerizing factor, putative, expressed
MaizeGDB (Corn) Zm00025a003068
Brachypodium KQJ97495 , PNT67739
Barley HORVU1Hr1G048450.4 , HORVU1Hr1G048450.5 , HORVU1Hr1G048450.1 , HORVU1Hr1G048450.2 , HORVU1Hr1G048450.3
Wheat TraesCS1A02G183100 , TraesCS1A02G183100 , TraesCS1D02G186600 , TraesCS1B02G197600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
2 Sobic.010G073900 expressed protein -
3 Sobic.001G432200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
4 Sobic.008G166100 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
5 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
6 Sobic.007G048101 - -
7 Sobic.009G202000 GATA zinc finger domain containing protein, expressed -
8 Sobic.009G238650 - -
9 Sobic.003G407700 dnaJ domain containing protein, expressed -
10 Sobic.003G093100 cyclin-related protein, putative, expressed -
11 Sobic.002G088600 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
12 Sobic.009G242600 ATPCME, putative, expressed K15889: prenylcysteine alpha-carboxyl methylesterase
13 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
14 Sobic.005G020600 Mad3/BUB1 homology region 1 domain containing protein, expressed -
15 Sobic.007G039200 MYB family transcription factor, putative, expressed -
16 Sobic.001G387300 exostosin family domain containing protein, expressed -
17 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
18 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
19 Sobic.010G003200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
20 Sobic.005G050400 syntaxin 6, putative, expressed -


Gene co-expression network
sample Sobic001G322400 Sobic001G322400 Sobic001G072000 Sobic001G072000 Sobic001G322400--Sobic001G072000 Sobic010G073900 Sobic010G073900 Sobic001G322400--Sobic010G073900 Sobic001G432200 Sobic001G432200 Sobic001G322400--Sobic001G432200 Sobic008G166100 Sobic008G166100 Sobic001G322400--Sobic008G166100 Sobic004G279200 Sobic004G279200 Sobic001G322400--Sobic004G279200 Sobic007G048101 Sobic007G048101 Sobic001G322400--Sobic007G048101 Sobic009G202000 Sobic009G202000 Sobic001G322400--Sobic009G202000 Sobic009G238650 Sobic009G238650 Sobic001G322400--Sobic009G238650 Sobic003G407700 Sobic003G407700 Sobic001G322400--Sobic003G407700 Sobic001G072000--Sobic001G322400 Sobic005G050400 Sobic005G050400 Sobic001G072000--Sobic005G050400 Sobic001G112600 Sobic001G112600 Sobic001G072000--Sobic001G112600 Sobic001G072000--Sobic004G279200 Sobic008G156600 Sobic008G156600 Sobic001G072000--Sobic008G156600 Sobic001G072000--Sobic001G432200 Sobic009G163100 Sobic009G163100 Sobic001G072000--Sobic009G163100 Sobic009G242200 Sobic009G242200 Sobic001G072000--Sobic009G242200 Sobic004G038500 Sobic004G038500 Sobic001G072000--Sobic004G038500 Sobic010G073900--Sobic003G407700 Sobic002G199800 Sobic002G199800 Sobic010G073900--Sobic002G199800 Sobic010G073900--Sobic009G238650 Sobic006G239500 Sobic006G239500 Sobic010G073900--Sobic006G239500 Sobic004G349600 Sobic004G349600 Sobic010G073900--Sobic004G349600 Sobic010G073900--Sobic001G322400 Sobic010G128350 Sobic010G128350 Sobic010G073900--Sobic010G128350 Sobic009G098700 Sobic009G098700 Sobic010G073900--Sobic009G098700 Sobic009G121200 Sobic009G121200 Sobic010G073900--Sobic009G121200 Sobic003G093100 Sobic003G093100 Sobic001G432200--Sobic003G093100 Sobic001G370400 Sobic001G370400 Sobic001G432200--Sobic001G370400 Sobic003G297100 Sobic003G297100 Sobic001G432200--Sobic003G297100 Sobic009G061601 Sobic009G061601 Sobic001G432200--Sobic009G061601 Sobic003G151400 Sobic003G151400 Sobic001G432200--Sobic003G151400 Sobic002G088600 Sobic002G088600 Sobic001G432200--Sobic002G088600 Sobic004G290600 Sobic004G290600 Sobic001G432200--Sobic004G290600 Sobic006G204500 Sobic006G204500 Sobic001G432200--Sobic006G204500 Sobic001G294500 Sobic001G294500 Sobic001G432200--Sobic001G294500 Sobic001G384200 Sobic001G384200 Sobic008G166100--Sobic001G384200 Sobic007G039200 Sobic007G039200 Sobic008G166100--Sobic007G039200 Sobic009G178400 Sobic009G178400 Sobic008G166100--Sobic009G178400 Sobic008G166100--Sobic001G322400 Sobic003G024100 Sobic003G024100 Sobic008G166100--Sobic003G024100 Sobic008G166100--Sobic009G202000 Sobic001G340800 Sobic001G340800 Sobic008G166100--Sobic001G340800 Sobic001G387300 Sobic001G387300 Sobic008G166100--Sobic001G387300 Sobic008G166100--Sobic001G432200 Sobic004G279200--Sobic001G072000 Sobic006G070564 Sobic006G070564 Sobic004G279200--Sobic006G070564 Sobic004G279200--Sobic005G050400 Sobic004G279200--Sobic001G322400 Sobic001G414650 Sobic001G414650 Sobic004G279200--Sobic001G414650 Sobic004G062200 Sobic004G062200 Sobic004G279200--Sobic004G062200 Sobic006G267100 Sobic006G267100 Sobic004G279200--Sobic006G267100 Sobic006G171600 Sobic006G171600 Sobic004G279200--Sobic006G171600 Sobic004G279200--Sobic001G112600 Sobic007G048101--Sobic009G238650 Sobic007G048101--Sobic002G088600 Sobic007G048101--Sobic003G093100 Sobic004G177900 Sobic004G177900 Sobic007G048101--Sobic004G177900 Sobic007G048101--Sobic006G239500 Sobic007G048101--Sobic004G349600 Sobic008G025400 Sobic008G025400 Sobic007G048101--Sobic008G025400 Sobic007G048101--Sobic010G073900 Sobic007G048101--Sobic001G294500 Sobic009G202000--Sobic001G432200 Sobic009G202000--Sobic004G290600 Sobic010G142650 Sobic010G142650 Sobic009G202000--Sobic010G142650 Sobic009G202000--Sobic002G088600 Sobic009G202000--Sobic003G093100 Sobic010G003200 Sobic010G003200 Sobic009G202000--Sobic010G003200 Sobic009G202000--Sobic001G370400 Sobic009G202000--Sobic006G171600 Sobic009G202000--Sobic004G177900 Sobic009G238650--Sobic006G239500 Sobic009G238650--Sobic004G349600 Sobic009G238650--Sobic002G199800 Sobic009G238650--Sobic010G073900 Sobic009G238650--Sobic002G088600 Sobic009G238650--Sobic010G128350 Sobic005G120400 Sobic005G120400 Sobic009G238650--Sobic005G120400 Sobic009G238650--Sobic003G407700 Sobic009G238650--Sobic007G048101 Sobic003G407700--Sobic010G073900 Sobic003G407700--Sobic002G199800 Sobic003G407700--Sobic004G349600 Sobic003G407700--Sobic009G238650 Sobic003G407700--Sobic006G239500 Sobic003G407700--Sobic009G121200 Sobic003G407700--Sobic009G098700 Sobic003G407700--Sobic005G120400 Sobic001G165901 Sobic001G165901 Sobic003G407700--Sobic001G165901
Octagon: transcription factors


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