Gene annotation
Transcriptome id Sobic.003G093100.4,Sobic.003G093100.3,Sobic.003G093100.2,Sobic.003G093100.6
Synonym Sb03g007790
Functional annotation cyclin-related protein, putative, expressed
UniProt A0A1B6Q288
Pfam -
Panther DB PTHR12444 PTHR12444:SF5
NCBI CDD KOG1877; Putative transmembrane protein cmp44E
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G21080 : Uncharacterized protein
RAP-DB (Rice) LOC_Os02g53990.1 : cyclin-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a023671 , Zm00025a035514
Brachypodium PNT69531
Barley HORVU0Hr1G017240.1 , HORVU6Hr1G081920.1 , HORVU6Hr1G081920.2 , HORVU0Hr1G017240.2
Wheat TraesCS6B02G370500 , TraesCS6A02G339500 , TraesCS6D02G320100 , TraesCS6A02G339500 , TraesCS6D02G320100
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G025400 ankyrin, putative, expressed -
2 Sobic.001G294500 phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
3 Sobic.003G151400 protein kinase, putative, expressed K13436: pto-interacting protein 1
4 Sobic.002G088600 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
5 Sobic.004G177900 - -
6 Sobic.007G131000 dynamin-2B, putative, expressed K01528: dynamin 1/3
7 Sobic.003G246500 3-5 exonuclease domain-containing protein, putative, expressed -
8 Sobic.003G164400 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
9 Sobic.009G061601 - -
10 Sobic.003G111000 transporter family protein, putative, expressed -
11 Sobic.003G304600 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
12 Sobic.001G109900 expressed protein -
13 Sobic.005G043300 - -
14 Sobic.004G100900 tetratricopeptide repeat domain containing protein, expressed -
15 Sobic.005G204600 OsMADS68 - MADS-box family gene with MIKC , type-box, expressed -
16 Sobic.010G091800 expressed protein -
17 Sobic.007G016700 OsFBX142 - F-box domain containing protein, expressed -
18 Sobic.007G051100 secretory carrier-associated membrane protein 5, putative, expressed -
19 Sobic.007G129800 expressed protein -
20 Sobic.001G212500 vacuolar protein sorting-associated protein 52, putative, expressed -


Gene co-expression network
sample Sobic003G093100 Sobic003G093100 Sobic008G025400 Sobic008G025400 Sobic003G093100--Sobic008G025400 Sobic001G294500 Sobic001G294500 Sobic003G093100--Sobic001G294500 Sobic003G151400 Sobic003G151400 Sobic003G093100--Sobic003G151400 Sobic002G088600 Sobic002G088600 Sobic003G093100--Sobic002G088600 Sobic004G177900 Sobic004G177900 Sobic003G093100--Sobic004G177900 Sobic007G131000 Sobic007G131000 Sobic003G093100--Sobic007G131000 Sobic003G246500 Sobic003G246500 Sobic003G093100--Sobic003G246500 Sobic003G164400 Sobic003G164400 Sobic003G093100--Sobic003G164400 Sobic009G061601 Sobic009G061601 Sobic003G093100--Sobic009G061601 Sobic008G025400--Sobic003G093100 Sobic008G025400--Sobic001G294500 Sobic003G111000 Sobic003G111000 Sobic008G025400--Sobic003G111000 Sobic008G025400--Sobic003G151400 Sobic008G025400--Sobic003G246500 Sobic008G025400--Sobic003G164400 Sobic008G025400--Sobic004G177900 Sobic008G025400--Sobic002G088600 Sobic008G025400--Sobic007G131000 Sobic001G294500--Sobic007G131000 Sobic001G294500--Sobic004G177900 Sobic001G294500--Sobic003G151400 Sobic005G043300 Sobic005G043300 Sobic001G294500--Sobic005G043300 Sobic001G294500--Sobic003G246500 Sobic001G294500--Sobic008G025400 Sobic001G294500--Sobic003G093100 Sobic005G204600 Sobic005G204600 Sobic001G294500--Sobic005G204600 Sobic001G294500--Sobic009G061601 Sobic003G151400--Sobic001G294500 Sobic001G109900 Sobic001G109900 Sobic003G151400--Sobic001G109900 Sobic003G151400--Sobic007G131000 Sobic003G151400--Sobic003G093100 Sobic003G151400--Sobic009G061601 Sobic003G151400--Sobic008G025400 Sobic006G205400 Sobic006G205400 Sobic003G151400--Sobic006G205400 Sobic005G092100 Sobic005G092100 Sobic003G151400--Sobic005G092100 Sobic002G254700 Sobic002G254700 Sobic003G151400--Sobic002G254700 Sobic002G088600--Sobic004G177900 Sobic002G088600--Sobic003G093100 Sobic002G088600--Sobic001G294500 Sobic002G088600--Sobic008G025400 Sobic002G088600--Sobic003G151400 Sobic004G328500 Sobic004G328500 Sobic002G088600--Sobic004G328500 Sobic002G088600--Sobic007G131000 Sobic002G088600--Sobic009G061601 Sobic002G088600--Sobic005G043300 Sobic004G177900--Sobic002G088600 Sobic004G177900--Sobic001G294500 Sobic004G177900--Sobic003G093100 Sobic004G177900--Sobic008G025400 Sobic004G177900--Sobic004G328500 Sobic004G177900--Sobic005G043300 Sobic004G177900--Sobic003G151400 Sobic004G177900--Sobic007G131000 Sobic004G177900--Sobic003G246500 Sobic007G131000--Sobic003G246500 Sobic005G040700 Sobic005G040700 Sobic007G131000--Sobic005G040700 Sobic004G100900 Sobic004G100900 Sobic007G131000--Sobic004G100900 Sobic003G175950 Sobic003G175950 Sobic007G131000--Sobic003G175950 Sobic010G051000 Sobic010G051000 Sobic007G131000--Sobic010G051000 Sobic001G332000 Sobic001G332000 Sobic007G131000--Sobic001G332000 Sobic001G329200 Sobic001G329200 Sobic007G131000--Sobic001G329200 Sobic001G269100 Sobic001G269100 Sobic007G131000--Sobic001G269100 Sobic001G171300 Sobic001G171300 Sobic007G131000--Sobic001G171300 Sobic003G246500--Sobic004G100900 Sobic010G091800 Sobic010G091800 Sobic003G246500--Sobic010G091800 Sobic001G269800 Sobic001G269800 Sobic003G246500--Sobic001G269800 Sobic002G053800 Sobic002G053800 Sobic003G246500--Sobic002G053800 Sobic009G203900 Sobic009G203900 Sobic003G246500--Sobic009G203900 Sobic004G293300 Sobic004G293300 Sobic003G246500--Sobic004G293300 Sobic008G154300 Sobic008G154300 Sobic003G246500--Sobic008G154300 Sobic001G306400 Sobic001G306400 Sobic003G246500--Sobic001G306400 Sobic007G222100 Sobic007G222100 Sobic003G246500--Sobic007G222100 Sobic005G026700 Sobic005G026700 Sobic003G164400--Sobic005G026700 Sobic006G142200 Sobic006G142200 Sobic003G164400--Sobic006G142200 Sobic002G414150 Sobic002G414150 Sobic003G164400--Sobic002G414150 Sobic004G217200 Sobic004G217200 Sobic003G164400--Sobic004G217200 Sobic005G006300 Sobic005G006300 Sobic003G164400--Sobic005G006300 Sobic005G009500 Sobic005G009500 Sobic003G164400--Sobic005G009500 Sobic001G269400 Sobic001G269400 Sobic003G164400--Sobic001G269400 Sobic005G204500 Sobic005G204500 Sobic003G164400--Sobic005G204500 Sobic009G097000 Sobic009G097000 Sobic003G164400--Sobic009G097000 Sobic009G061601--Sobic007G131000 Sobic007G215200 Sobic007G215200 Sobic009G061601--Sobic007G215200 Sobic009G061601--Sobic001G294500 Sobic009G061601--Sobic003G151400 Sobic009G061601--Sobic006G205400 Sobic009G061601--Sobic005G204600 Sobic001G063300 Sobic001G063300 Sobic009G061601--Sobic001G063300 Sobic010G207800 Sobic010G207800 Sobic009G061601--Sobic010G207800 Sobic001G261416 Sobic001G261416 Sobic009G061601--Sobic001G261416
Octagon: transcription factors


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