Gene annotation
Transcriptome id Sobic.001G212500.1
Synonym TTD8, POK, ATVPS52
Functional annotation vacuolar protein sorting-associated protein 52, putative, expressed
UniProt A0A1B6QK45
Pfam PF04129
Panther DB PTHR14190 PTHR14190:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G71270 : Vps52 / Sac2 family
RAP-DB (Rice) LOC_Os10g34680.1 : vacuolar protein sorting-associated protein 52, putative, expressed
MaizeGDB (Corn) Zm00025a006529
Brachypodium PNT67599 , PNT67603 , PNT67602 , PNT67601 , PNT67600
Barley HORVU1Hr1G043280.39 , HORVU1Hr1G043280.68 , HORVU1Hr1G043280.67 , HORVU1Hr1G043280.66 , HORVU1Hr1G043280.65 , HORVU1Hr1G043280.64 , HORVU1Hr1G043280.63 , HORVU1Hr1G043280.61 , HORVU1Hr1G043280.60 , HORVU1Hr1G043280.74 , HORVU1Hr1G043280.75 , HORVU1Hr1G043280.76 , HORVU1Hr1G043280.71 , HORVU1Hr1G043280.72 , HORVU1Hr1G043280.73 , HORVU1Hr1G043280.41 , HORVU1Hr1G043280.42 , HORVU1Hr1G043280.47 , HORVU1Hr1G043280.46 , HORVU1Hr1G043280.1 , HORVU1Hr1G043280.2 , HORVU1Hr1G043280.3 , HORVU1Hr1G043280.4 , HORVU1Hr1G043280.5 , HORVU1Hr1G043280.6 , HORVU1Hr1G043280.7 , HORVU1Hr1G043280.8 , HORVU1Hr1G043280.9 , HORVU1Hr1G043280.23 , HORVU1Hr1G043280.22 , HORVU1Hr1G043280.21 , HORVU1Hr1G043280.20 , HORVU1Hr1G043280.27 , HORVU1Hr1G043280.26 , HORVU1Hr1G043280.25 , HORVU1Hr1G043280.24 , HORVU1Hr1G043280.29 , HORVU1Hr1G043280.28 , HORVU1Hr1G043280.57 , HORVU1Hr1G043280.55 , HORVU1Hr1G043280.53 , HORVU1Hr1G043280.50 , HORVU1Hr1G043280.58 , HORVU1Hr1G043280.59 , HORVU1Hr1G043280.31 , HORVU1Hr1G043280.33 , HORVU1Hr1G043280.34 , HORVU1Hr1G043280.35 , HORVU1Hr1G043280.36 , HORVU1Hr1G043280.37 , HORVU1Hr1G043280.38 , HORVU1Hr1G043280.18 , HORVU1Hr1G043280.19 , HORVU1Hr1G043280.12 , HORVU1Hr1G043280.13 , HORVU1Hr1G043280.10 , HORVU1Hr1G043280.11 , HORVU1Hr1G043280.16 , HORVU1Hr1G043280.17 , HORVU1Hr1G043280.14 , HORVU1Hr1G043280.15
Wheat TraesCS1B02G179200 , TraesCS1B02G179200 , TraesCS1D02G159400 , TraesCS1D02G159400 , TraesCS1D02G159400 , TraesCS1D02G159400 , TraesCS1D02G159400 , TraesCS1D02G159400 , TraesCS1D02G159400 , TraesCS1A02G163100 , TraesCS1A02G163100
Populus -


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cDNA sequences
Sobic.001G212500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G100900 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.005G040700 amino acid permease family protein, putative, expressed -
3 Sobic.003G175950 - -
4 Sobic.001G329200 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
5 Sobic.001G332000 pollen allergen, putative, expressed -
6 Sobic.001G269100 lysosomal alpha-mannosidase precursor, putative, expressed -
7 Sobic.010G051000 "domain confirmed by Pfam database, expressed in flower, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
8 Sobic.001G130500 - -
9 Sobic.001G287400 VQ domain containing protein, putative, expressed -
10 Sobic.001G171300 UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
11 Sobic.007G222100 - -
12 Sobic.001G165700 B3 DNA binding domain containing protein, expressed -
13 Sobic.009G203900 profilin domain containing protein, expressed K05759: profilin
14 Sobic.001G306500 expansin precursor, putative, expressed -
15 Sobic.001G024900 expressed protein -
16 Sobic.001G261416 - K01858: INO1, myo-inositol-1-phosphate synthase
17 Sobic.001G063300 CAMK_CAMK_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
18 Sobic.001G288400 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
19 Sobic.003G175600 plant protein of unknown function domain containing protein, expressed -
20 Sobic.001G093100 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic001G212500 Sobic001G212500 Sobic004G100900 Sobic004G100900 Sobic001G212500--Sobic004G100900 Sobic005G040700 Sobic005G040700 Sobic001G212500--Sobic005G040700 Sobic003G175950 Sobic003G175950 Sobic001G212500--Sobic003G175950 Sobic001G329200 Sobic001G329200 Sobic001G212500--Sobic001G329200 Sobic001G332000 Sobic001G332000 Sobic001G212500--Sobic001G332000 Sobic001G269100 Sobic001G269100 Sobic001G212500--Sobic001G269100 Sobic010G051000 Sobic010G051000 Sobic001G212500--Sobic010G051000 Sobic001G130500 Sobic001G130500 Sobic001G212500--Sobic001G130500 Sobic001G287400 Sobic001G287400 Sobic001G212500--Sobic001G287400 Sobic001G024900 Sobic001G024900 Sobic004G100900--Sobic001G024900 Sobic007G222100 Sobic007G222100 Sobic004G100900--Sobic007G222100 Sobic001G306500 Sobic001G306500 Sobic004G100900--Sobic001G306500 Sobic001G288400 Sobic001G288400 Sobic004G100900--Sobic001G288400 Sobic004G100900--Sobic010G051000 Sobic001G269800 Sobic001G269800 Sobic004G100900--Sobic001G269800 Sobic009G203900 Sobic009G203900 Sobic004G100900--Sobic009G203900 Sobic001G306400 Sobic001G306400 Sobic004G100900--Sobic001G306400 Sobic001G093100 Sobic001G093100 Sobic004G100900--Sobic001G093100 Sobic005G040700--Sobic003G175950 Sobic005G040700--Sobic001G332000 Sobic005G040700--Sobic010G051000 Sobic005G040700--Sobic001G130500 Sobic005G040700--Sobic001G329200 Sobic005G040700--Sobic001G269100 Sobic005G040700--Sobic007G222100 Sobic005G040700--Sobic001G287400 Sobic005G040700--Sobic001G306500 Sobic003G175950--Sobic001G329200 Sobic003G175950--Sobic001G130500 Sobic003G175950--Sobic001G332000 Sobic003G175950--Sobic005G040700 Sobic001G171300 Sobic001G171300 Sobic003G175950--Sobic001G171300 Sobic003G175950--Sobic001G287400 Sobic003G175950--Sobic001G269100 Sobic003G175950--Sobic010G051000 Sobic001G165700 Sobic001G165700 Sobic003G175950--Sobic001G165700 Sobic001G329200--Sobic003G175950 Sobic001G329200--Sobic001G332000 Sobic001G329200--Sobic001G287400 Sobic001G329200--Sobic001G171300 Sobic001G329200--Sobic001G130500 Sobic001G329200--Sobic005G040700 Sobic001G261416 Sobic001G261416 Sobic001G329200--Sobic001G261416 Sobic001G329200--Sobic001G165700 Sobic001G329200--Sobic001G269100 Sobic001G332000--Sobic001G329200 Sobic001G332000--Sobic001G130500 Sobic001G332000--Sobic003G175950 Sobic001G332000--Sobic005G040700 Sobic001G332000--Sobic001G287400 Sobic001G332000--Sobic001G171300 Sobic001G332000--Sobic010G051000 Sobic001G332000--Sobic001G269100 Sobic001G332000--Sobic001G261416 Sobic001G269100--Sobic003G175950 Sobic001G269100--Sobic005G040700 Sobic001G269100--Sobic001G329200 Sobic001G269100--Sobic010G051000 Sobic001G269100--Sobic009G203900 Sobic001G269100--Sobic001G130500 Sobic001G269100--Sobic007G222100 Sobic001G269100--Sobic001G287400 Sobic001G269100--Sobic001G171300 Sobic010G051000--Sobic007G222100 Sobic010G051000--Sobic001G306500 Sobic010G051000--Sobic001G024900 Sobic010G051000--Sobic001G288400 Sobic010G051000--Sobic005G040700 Sobic010G051000--Sobic009G203900 Sobic010G051000--Sobic003G175950 Sobic010G051000--Sobic001G130500 Sobic010G051000--Sobic004G100900 Sobic001G130500--Sobic003G175950 Sobic001G130500--Sobic001G329200 Sobic001G130500--Sobic001G332000 Sobic001G130500--Sobic005G040700 Sobic001G130500--Sobic001G171300 Sobic001G130500--Sobic001G287400 Sobic001G130500--Sobic010G051000 Sobic001G130500--Sobic001G269100 Sobic001G130500--Sobic001G165700 Sobic001G287400--Sobic001G329200 Sobic001G287400--Sobic001G171300 Sobic001G287400--Sobic003G175950 Sobic001G287400--Sobic001G332000 Sobic001G287400--Sobic001G261416 Sobic001G287400--Sobic001G130500 Sobic001G287400--Sobic001G165700 Sobic001G287400--Sobic005G040700 Sobic001G287400--Sobic001G269100
Octagon: transcription factors


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