Gene annotation
Transcriptome id Sobic.005G040700.1,Sobic.005G040700.2
Synonym Sb05g003370, ATCCC1, HAP5, CCC1
Functional annotation amino acid permease family protein, putative, expressed
UniProt C5Y503 , A0A1Z5RGT2
Pfam PF03522 PF00324
Panther DB PTHR11827 PTHR11827:SF68
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005215transporter activity GO:0006810transport


Orthologs (automatic annotation)
TAIR AT1G30450 : cation-chloride co-transporter 1
RAP-DB (Rice) LOC_Os08g23440.1 : amino acid permease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a033506
Brachypodium PNT70428 , KQK04093 , PNT70427 , PNT70426 , PNT70425 , KQK20003 , KQK20002 , KQK20001 , KQK06750 , KQK04094 , KQK06749 , PNT71488
Barley HORVU2Hr1G011870.9 , HORVU2Hr1G011870.8 , HORVU2Hr1G011870.3 , HORVU2Hr1G011870.2 , HORVU2Hr1G011870.1 , HORVU2Hr1G011870.7 , HORVU2Hr1G011870.6 , HORVU2Hr1G011870.5 , HORVU2Hr1G011870.4 , HORVU2Hr1G011870.13 , HORVU2Hr1G011870.12 , HORVU2Hr1G011870.11 , HORVU2Hr1G011870.10 , HORVU7Hr1G058130.4 , HORVU7Hr1G058130.5 , HORVU7Hr1G058130.6 , HORVU7Hr1G058130.1 , HORVU7Hr1G058130.2 , HORVU7Hr1G058130.3
Wheat TraesCS5B02G368800 , TraesCS2D02G058700 , TraesCS2A02G059800 , TraesCS2B02G069800 , TraesCS5D02G375900 , TraesCS7A02G276500 , TraesCS7D02G276400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G175950 - -
2 Sobic.001G332000 pollen allergen, putative, expressed -
3 Sobic.010G051000 "domain confirmed by Pfam database, expressed in flower, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
4 Sobic.001G130500 - -
5 Sobic.001G329200 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
6 Sobic.001G269100 lysosomal alpha-mannosidase precursor, putative, expressed -
7 Sobic.007G222100 - -
8 Sobic.001G287400 VQ domain containing protein, putative, expressed -
9 Sobic.001G306500 expansin precursor, putative, expressed -
10 Sobic.001G024900 expressed protein -
11 Sobic.009G203900 profilin domain containing protein, expressed K05759: profilin
12 Sobic.001G288400 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
13 Sobic.001G171300 UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
14 Sobic.004G100900 tetratricopeptide repeat domain containing protein, expressed -
15 Sobic.001G093100 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
16 Sobic.001G165700 B3 DNA binding domain containing protein, expressed -
17 Sobic.010G144700 plant protein of unknown function domain containing protein, expressed -
18 Sobic.010G040400 polygalacturonase, putative, expressed -
19 Sobic.001G261416 - K01858: INO1, myo-inositol-1-phosphate synthase
20 Sobic.007G145500 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein


Gene co-expression network
sample Sobic005G040700 Sobic005G040700 Sobic003G175950 Sobic003G175950 Sobic005G040700--Sobic003G175950 Sobic001G332000 Sobic001G332000 Sobic005G040700--Sobic001G332000 Sobic010G051000 Sobic010G051000 Sobic005G040700--Sobic010G051000 Sobic001G130500 Sobic001G130500 Sobic005G040700--Sobic001G130500 Sobic001G329200 Sobic001G329200 Sobic005G040700--Sobic001G329200 Sobic001G269100 Sobic001G269100 Sobic005G040700--Sobic001G269100 Sobic007G222100 Sobic007G222100 Sobic005G040700--Sobic007G222100 Sobic001G287400 Sobic001G287400 Sobic005G040700--Sobic001G287400 Sobic001G306500 Sobic001G306500 Sobic005G040700--Sobic001G306500 Sobic003G175950--Sobic001G329200 Sobic003G175950--Sobic001G130500 Sobic003G175950--Sobic001G332000 Sobic003G175950--Sobic005G040700 Sobic001G171300 Sobic001G171300 Sobic003G175950--Sobic001G171300 Sobic003G175950--Sobic001G287400 Sobic003G175950--Sobic001G269100 Sobic003G175950--Sobic010G051000 Sobic001G165700 Sobic001G165700 Sobic003G175950--Sobic001G165700 Sobic001G332000--Sobic001G329200 Sobic001G332000--Sobic001G130500 Sobic001G332000--Sobic003G175950 Sobic001G332000--Sobic005G040700 Sobic001G332000--Sobic001G287400 Sobic001G332000--Sobic001G171300 Sobic001G332000--Sobic010G051000 Sobic001G332000--Sobic001G269100 Sobic001G261416 Sobic001G261416 Sobic001G332000--Sobic001G261416 Sobic010G051000--Sobic007G222100 Sobic010G051000--Sobic001G306500 Sobic001G024900 Sobic001G024900 Sobic010G051000--Sobic001G024900 Sobic001G288400 Sobic001G288400 Sobic010G051000--Sobic001G288400 Sobic010G051000--Sobic005G040700 Sobic009G203900 Sobic009G203900 Sobic010G051000--Sobic009G203900 Sobic010G051000--Sobic003G175950 Sobic010G051000--Sobic001G130500 Sobic004G100900 Sobic004G100900 Sobic010G051000--Sobic004G100900 Sobic001G130500--Sobic003G175950 Sobic001G130500--Sobic001G329200 Sobic001G130500--Sobic001G332000 Sobic001G130500--Sobic005G040700 Sobic001G130500--Sobic001G171300 Sobic001G130500--Sobic001G287400 Sobic001G130500--Sobic010G051000 Sobic001G130500--Sobic001G269100 Sobic001G130500--Sobic001G165700 Sobic001G329200--Sobic003G175950 Sobic001G329200--Sobic001G332000 Sobic001G329200--Sobic001G287400 Sobic001G329200--Sobic001G171300 Sobic001G329200--Sobic001G130500 Sobic001G329200--Sobic005G040700 Sobic001G329200--Sobic001G261416 Sobic001G329200--Sobic001G165700 Sobic001G329200--Sobic001G269100 Sobic001G269100--Sobic003G175950 Sobic001G269100--Sobic005G040700 Sobic001G269100--Sobic001G329200 Sobic001G269100--Sobic010G051000 Sobic001G269100--Sobic009G203900 Sobic001G269100--Sobic001G130500 Sobic001G269100--Sobic007G222100 Sobic001G269100--Sobic001G287400 Sobic001G269100--Sobic001G171300 Sobic007G222100--Sobic001G024900 Sobic007G222100--Sobic010G051000 Sobic007G222100--Sobic001G306500 Sobic007G222100--Sobic009G203900 Sobic007G222100--Sobic001G288400 Sobic007G222100--Sobic004G100900 Sobic001G269800 Sobic001G269800 Sobic007G222100--Sobic001G269800 Sobic007G222100--Sobic005G040700 Sobic001G306400 Sobic001G306400 Sobic007G222100--Sobic001G306400 Sobic001G287400--Sobic001G329200 Sobic001G287400--Sobic001G171300 Sobic001G287400--Sobic003G175950 Sobic001G287400--Sobic001G332000 Sobic001G287400--Sobic001G261416 Sobic001G287400--Sobic001G130500 Sobic001G287400--Sobic001G165700 Sobic001G287400--Sobic005G040700 Sobic001G287400--Sobic001G269100 Sobic001G306500--Sobic001G024900 Sobic001G306500--Sobic007G222100 Sobic001G306500--Sobic001G288400 Sobic001G306500--Sobic010G051000 Sobic001G093100 Sobic001G093100 Sobic001G306500--Sobic001G093100 Sobic001G306500--Sobic009G203900 Sobic001G306500--Sobic004G100900 Sobic001G306500--Sobic001G306400 Sobic001G306500--Sobic005G040700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.