Gene annotation
Transcriptome id Sobic.010G040400.1
Synonym Sb10g003580
Functional annotation polygalacturonase, putative, expressed
UniProt C5Z4A7
Pfam PF00295
Panther DB PTHR31375 PTHR31375:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004650polygalacturonase activity


Orthologs (automatic annotation)
TAIR AT4G18180 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os08g23790.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a030820 , Zm00025a038502 , Zm00025a019627 , Zm00025a019626 , Zm00025a058207 , Zm00025a034655 , Zm00025a017619 , Zm00025a004093 , Zm00025a058214 , Zm00025a019631
Brachypodium KQK17686 , KQK17684 , KQK04485 , KQJ96034 , KQK18286
Barley HORVU4Hr1G014790.2 , HORVU4Hr1G014790.1 , HORVU2Hr1G106510.1 , HORVU5Hr1G111650.5 , HORVU5Hr1G111650.4 , HORVU5Hr1G111650.3 , HORVU5Hr1G111650.1 , HORVU5Hr1G111650.2 , HORVU4Hr1G014780.1 , HORVU4Hr1G014780.2
Wheat TraesCS2A02G469000 , TraesCS7D02G397900 , TraesCS2A02G468400 , TraesCS2A02G468400 , TraesCS5D02G481800 , TraesCS7A02G404900 , TraesCS5A02G468900 , TraesCS2D02G468500 , TraesCS2D02G469100 , TraesCS7D02G398900 , TraesCS2B02G491900 , TraesCS7A02G405000 , TraesCS2D02G402000 , TraesCS2A02G405100 , TraesCS7B02G304100 , TraesCS2B02G423200 , TraesCS7D02G399000 , TraesCS5B02G481500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G040400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G175400 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
2 Sobic.010G276100 transporter family protein, putative, expressed -
3 Sobic.010G144700 plant protein of unknown function domain containing protein, expressed -
4 Sobic.001G332000 pollen allergen, putative, expressed -
5 Sobic.005G040700 amino acid permease family protein, putative, expressed -
6 Sobic.001G092500 protein kinase domain containing protein, expressed -
7 Sobic.009G082900 POEI21 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
8 Sobic.010G051000 "domain confirmed by Pfam database, expressed in flower, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
9 Sobic.001G288400 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
10 Sobic.001G130500 - -
11 Sobic.001G306500 expansin precursor, putative, expressed -
12 Sobic.008G043200 - -
13 Sobic.001G329200 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
14 Sobic.001G287400 VQ domain containing protein, putative, expressed -
15 Sobic.003G175950 - -
16 Sobic.001G093100 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
17 Sobic.001G024900 expressed protein -
18 Sobic.007G222100 - -
19 Sobic.009G075400 RALFL17 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
20 Sobic.008G043300 - -


Gene co-expression network
sample Sobic010G040400 Sobic010G040400 Sobic009G175400 Sobic009G175400 Sobic010G040400--Sobic009G175400 Sobic010G276100 Sobic010G276100 Sobic010G040400--Sobic010G276100 Sobic010G144700 Sobic010G144700 Sobic010G040400--Sobic010G144700 Sobic001G332000 Sobic001G332000 Sobic010G040400--Sobic001G332000 Sobic005G040700 Sobic005G040700 Sobic010G040400--Sobic005G040700 Sobic001G092500 Sobic001G092500 Sobic010G040400--Sobic001G092500 Sobic009G082900 Sobic009G082900 Sobic010G040400--Sobic009G082900 Sobic010G051000 Sobic010G051000 Sobic010G040400--Sobic010G051000 Sobic001G288400 Sobic001G288400 Sobic010G040400--Sobic001G288400 Sobic009G175400--Sobic010G276100 Sobic009G175400--Sobic010G144700 Sobic009G175400--Sobic010G040400 Sobic009G175400--Sobic009G082900 Sobic009G175400--Sobic001G332000 Sobic008G043200 Sobic008G043200 Sobic009G175400--Sobic008G043200 Sobic009G175400--Sobic005G040700 Sobic009G175400--Sobic001G288400 Sobic005G145400 Sobic005G145400 Sobic009G175400--Sobic005G145400 Sobic010G276100--Sobic009G175400 Sobic010G276100--Sobic010G040400 Sobic010G276100--Sobic010G144700 Sobic010G276100--Sobic009G082900 Sobic010G276100--Sobic001G092500 Sobic006G259100 Sobic006G259100 Sobic010G276100--Sobic006G259100 Sobic010G276100--Sobic005G145400 Sobic004G002800 Sobic004G002800 Sobic010G276100--Sobic004G002800 Sobic001G252900 Sobic001G252900 Sobic010G276100--Sobic001G252900 Sobic010G144700--Sobic009G082900 Sobic010G144700--Sobic009G175400 Sobic010G144700--Sobic001G288400 Sobic010G144700--Sobic004G002800 Sobic001G306500 Sobic001G306500 Sobic010G144700--Sobic001G306500 Sobic010G144700--Sobic001G252900 Sobic010G144700--Sobic010G051000 Sobic001G093100 Sobic001G093100 Sobic010G144700--Sobic001G093100 Sobic001G024900 Sobic001G024900 Sobic010G144700--Sobic001G024900 Sobic001G329200 Sobic001G329200 Sobic001G332000--Sobic001G329200 Sobic001G130500 Sobic001G130500 Sobic001G332000--Sobic001G130500 Sobic003G175950 Sobic003G175950 Sobic001G332000--Sobic003G175950 Sobic001G332000--Sobic005G040700 Sobic001G287400 Sobic001G287400 Sobic001G332000--Sobic001G287400 Sobic001G171300 Sobic001G171300 Sobic001G332000--Sobic001G171300 Sobic001G332000--Sobic010G051000 Sobic001G269100 Sobic001G269100 Sobic001G332000--Sobic001G269100 Sobic001G261416 Sobic001G261416 Sobic001G332000--Sobic001G261416 Sobic005G040700--Sobic003G175950 Sobic005G040700--Sobic001G332000 Sobic005G040700--Sobic010G051000 Sobic005G040700--Sobic001G130500 Sobic005G040700--Sobic001G329200 Sobic005G040700--Sobic001G269100 Sobic007G222100 Sobic007G222100 Sobic005G040700--Sobic007G222100 Sobic005G040700--Sobic001G287400 Sobic005G040700--Sobic001G306500 Sobic001G092500--Sobic010G040400 Sobic001G092500--Sobic010G276100 Sobic005G191300 Sobic005G191300 Sobic001G092500--Sobic005G191300 Sobic001G092500--Sobic009G175400 Sobic001G092500--Sobic008G043200 Sobic010G016200 Sobic010G016200 Sobic001G092500--Sobic010G016200 Sobic008G043300 Sobic008G043300 Sobic001G092500--Sobic008G043300 Sobic001G092500--Sobic001G332000 Sobic001G092500--Sobic005G145400 Sobic009G082900--Sobic004G002800 Sobic009G082900--Sobic010G144700 Sobic009G082900--Sobic001G252900 Sobic009G082900--Sobic001G288400 Sobic005G025600 Sobic005G025600 Sobic009G082900--Sobic005G025600 Sobic003G073540 Sobic003G073540 Sobic009G082900--Sobic003G073540 Sobic009G082900--Sobic001G093100 Sobic006G159000 Sobic006G159000 Sobic009G082900--Sobic006G159000 Sobic009G075400 Sobic009G075400 Sobic009G082900--Sobic009G075400 Sobic010G051000--Sobic007G222100 Sobic010G051000--Sobic001G306500 Sobic010G051000--Sobic001G024900 Sobic010G051000--Sobic001G288400 Sobic010G051000--Sobic005G040700 Sobic009G203900 Sobic009G203900 Sobic010G051000--Sobic009G203900 Sobic010G051000--Sobic003G175950 Sobic010G051000--Sobic001G130500 Sobic004G100900 Sobic004G100900 Sobic010G051000--Sobic004G100900 Sobic001G288400--Sobic001G306500 Sobic001G288400--Sobic001G024900 Sobic001G288400--Sobic007G222100 Sobic001G288400--Sobic010G051000 Sobic001G288400--Sobic001G093100 Sobic001G288400--Sobic006G159000 Sobic001G288400--Sobic004G100900 Sobic001G288400--Sobic009G082900 Sobic001G288400--Sobic010G144700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.